View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19751_low_5 (Length: 316)
Name: NF19751_low_5
Description: NF19751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19751_low_5 |
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| [»] chr4 (2 HSPs) |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 27 - 316
Target Start/End: Original strand, 18012311 - 18012600
Alignment:
| Q |
27 |
tcttgacatgcttttgatctctgtttaactatcttcctggtctattttattatttggtagtaagtgtagcctaatagttgatgtattaacgtcattaatt |
126 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18012311 |
tcttgacatggttttgatctctgtttaactatcttcctggtctattttattatttggtagtaagtgtagcctaatagttgatgtattaacgtcattaatt |
18012410 |
T |
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| Q |
127 |
ctcaggttcatggaggttcaagtggaattggaacatttgcaattcagatagctaagtaccaaggatcaaaagtatttgttactgcaggttcagtaccact |
226 |
Q |
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| T |
18012411 |
ctcaggttcatggaggttcaagtggaattggaacatttgcaattcagatagctaagtaccaaggatcaaaagtatttgttactgcaggttcagtaccact |
18012510 |
T |
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| Q |
227 |
tttcatgttattcaagtcagttttcgtatgtttcgatgtgaaactgatgctatttcaagtttctcgcatcttgaaattccaagcgatgtt |
316 |
Q |
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| T |
18012511 |
tttcatgttattcaagtcagttttcgtatgtttcgatgtgaaactgatgctatttcaagtatctcacatcttgaaattccaagcgatgtt |
18012600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 6 - 316
Target Start/End: Complemental strand, 17974931 - 17974613
Alignment:
| Q |
6 |
attgggtattttgtctctgtttcttgacatgcttttgatctc--tgtttaactatcttcctggtctattttattatttggtagtaagtgtagcctaatag |
103 |
Q |
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| T |
17974931 |
attgggtattttgtcattgattcttgccatgcttttgatctcactgtatagttttcttcctgggttattttattatttggtagtaagtgttgcctattag |
17974832 |
T |
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| Q |
104 |
ttgatgtattaacgtcattaattctcaggttcatggaggttcaagtggaattggaacatttgcaattcagatagctaagtaccaaggatcaaaagtattt |
203 |
Q |
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| T |
17974831 |
ttgatgtattaactttattaattctcagattcatggaggttcaagtggaatcggaacattcgcaattcagatagctaagtacctaggatcaagagtattt |
17974732 |
T |
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| Q |
204 |
gttactgcaggttcagtaccacttttcatgtta------ttcaagtcagttttcgtatgtttcgatgtgaaactgatgctatttcaagtttctcgcatct |
297 |
Q |
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| T |
17974731 |
gttactgcaggttccgtaccacttttcatgttattaaacttctagtcagtttctgtctgtttagacgtgaaactggtactatttccagtttctcgtataa |
17974632 |
T |
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| Q |
298 |
tgaaattccaagcgatgtt |
316 |
Q |
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| T |
17974631 |
tcaaattccaagcgatgtt |
17974613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 27 - 316
Target Start/End: Complemental strand, 3067009 - 3066720
Alignment:
| Q |
27 |
tcttgacatgcttttgatctctgtttaactatcttcctggtctattttattatttggtagtaagtgtagcctaatagttgatgtattaacgtcattaatt |
126 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3067009 |
tcttgacatggttttgatctctgtttaactatcttcctggtctattttattatttggtagtaagtgtagcctaatagttgatgtattaacgtcattaatt |
3066910 |
T |
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| Q |
127 |
ctcaggttcatggaggttcaagtggaattggaacatttgcaattcagatagctaagtaccaaggatcaaaagtatttgttactgcaggttcagtaccact |
226 |
Q |
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| T |
3066909 |
ctcaggttcatggaggttcaagtggaattggaacatttgcaattcagatagctaagtaccaaggatcaaaagtatttgttactgcaggttcagtaccact |
3066810 |
T |
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| Q |
227 |
tttcatgttattcaagtcagttttcgtatgtttcgatgtgaaactgatgctatttcaagtttctcgcatcttgaaattccaagcgatgtt |
316 |
Q |
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| T |
3066809 |
tttcatgttattcaagtcagttttcgtatgtttcgatgtgaaactgatgctatttcaagtatctcacatcttgaaattccaagcgatgtt |
3066720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 6 - 316
Target Start/End: Complemental strand, 3078202 - 3077884
Alignment:
| Q |
6 |
attgggtattttgtctctgtttcttgacatgcttttgatctc--tgtttaactatcttcctggtctattttattatttggtagtaagtgtagcctaatag |
103 |
Q |
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||||||||||||||| || |||||| ||||||||||||||| ||| || | ||||||||| ||||||||||||||||||||||||| ||||| ||| |
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| T |
3078202 |
attgggtattttgtcattgattcttgccatgcttttgatctcactgtatagttttcttcctgggttattttattatttggtagtaagtgttgcctattag |
3078103 |
T |
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| Q |
104 |
ttgatgtattaacgtcattaattctcaggttcatggaggttcaagtggaattggaacatttgcaattcagatagctaagtaccaaggatcaaaagtattt |
203 |
Q |
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| T |
3078102 |
ttgatgtattaactttattaattctcagattcatggaggttcaagtggaatcggaacattcgcaattcagatagctaagtacctaggatcaagagtattt |
3078003 |
T |
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| Q |
204 |
gttactgcaggttcagtaccacttttcatgtta------ttcaagtcagttttcgtatgtttcgatgtgaaactgatgctatttcaagtttctcgcatct |
297 |
Q |
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|||||||||||||| |||||||||||||||||| ||| ||||||||| || ||||| || ||||||||| | ||||||| ||||||||| || |
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| T |
3078002 |
gttactgcaggttccgtaccacttttcatgttattaaacttctagtcagtttctgtctgtttagacgtgaaactggtactatttccagtttctcgtataa |
3077903 |
T |
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| Q |
298 |
tgaaattccaagcgatgtt |
316 |
Q |
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| T |
3077902 |
tcaaattccaagcgatgtt |
3077884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 316
Target Start/End: Original strand, 3069648 - 3069723
Alignment:
| Q |
241 |
agtcagttttcgtatgtttcgatgtgaaactgatgctatttcaagtttctcgcatcttgaaattccaagcgatgtt |
316 |
Q |
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| T |
3069648 |
agtcagtttctgtatgtttagatgtgaaactggaactatttctagtttctcgtatattcaaactccaagcgatgtt |
3069723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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