View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19751_low_7 (Length: 228)

Name: NF19751_low_7
Description: NF19751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19751_low_7
NF19751_low_7
[»] chr1 (24 HSPs)
chr1 (103-228)||(33222160-33222285)
chr1 (43-76)||(7427035-7427068)
chr1 (43-76)||(49685984-49686017)
chr1 (44-76)||(9223230-9223262)
chr1 (39-75)||(9260192-9260228)
chr1 (44-76)||(14131724-14131756)
chr1 (44-76)||(43225020-43225052)
chr1 (32-74)||(7489326-7489369)
chr1 (41-76)||(33829240-33829275)
chr1 (41-76)||(33838691-33838726)
chr1 (46-76)||(8569351-8569381)
chr1 (42-76)||(14190888-14190922)
chr1 (42-76)||(28095122-28095156)
chr1 (33-74)||(12105536-12105577)
chr1 (41-74)||(17554194-17554227)
chr1 (43-76)||(25493497-25493530)
chr1 (43-76)||(46872368-46872401)
chr1 (40-76)||(3150560-3150596)
chr1 (38-66)||(33081982-33082010)
chr1 (42-74)||(35874315-35874347)
chr1 (43-75)||(37765630-37765662)
chr1 (42-74)||(44263644-44263676)
chr1 (36-68)||(46281934-46281966)
chr1 (40-76)||(49739139-49739175)
[»] chr7 (14 HSPs)
chr7 (32-76)||(27130918-27130962)
chr7 (32-76)||(3061890-3061934)
chr7 (41-76)||(1282182-1282217)
chr7 (43-76)||(15090667-15090700)
chr7 (44-76)||(24505123-24505155)
chr7 (44-76)||(25866905-25866937)
chr7 (43-75)||(45197180-45197212)
chr7 (44-76)||(47219956-47219988)
chr7 (41-76)||(42902761-42902796)
chr7 (41-74)||(5583240-5583273)
chr7 (42-75)||(7574490-7574523)
chr7 (43-76)||(40947348-40947381)
chr7 (38-75)||(47069337-47069374)
chr7 (42-74)||(47369596-47369628)
[»] chr5 (17 HSPs)
chr5 (32-76)||(22798445-22798490)
chr5 (39-76)||(2148501-2148538)
chr5 (43-76)||(25684072-25684105)
chr5 (44-76)||(11758612-11758644)
chr5 (40-76)||(27353417-27353453)
chr5 (44-76)||(37314212-37314244)
chr5 (44-75)||(31236965-31236996)
chr5 (35-76)||(8068693-8068735)
chr5 (43-76)||(10688392-10688425)
chr5 (47-76)||(23189442-23189471)
chr5 (41-74)||(32993703-32993736)
chr5 (47-76)||(40340430-40340459)
chr5 (33-69)||(6560815-6560851)
chr5 (44-76)||(15725945-15725977)
chr5 (32-75)||(16729711-16729755)
chr5 (44-76)||(32624176-32624208)
chr5 (43-75)||(39541095-39541127)
[»] chr4 (16 HSPs)
chr4 (39-76)||(46222369-46222406)
chr4 (40-76)||(44998407-44998443)
chr4 (42-76)||(21514987-21515021)
chr4 (43-76)||(45629107-45629140)
chr4 (44-76)||(2526171-2526203)
chr4 (44-76)||(24291978-24292010)
chr4 (44-76)||(54505941-54505973)
chr4 (41-76)||(33612520-33612555)
chr4 (33-76)||(36569638-36569680)
chr4 (44-75)||(42244913-42244944)
chr4 (41-76)||(46631021-46631056)
chr4 (42-76)||(27967507-27967541)
chr4 (32-74)||(48647398-48647439)
chr4 (40-74)||(56302829-56302863)
chr4 (34-62)||(31296907-31296935)
chr4 (40-76)||(52257128-52257164)
[»] chr2 (12 HSPs)
chr2 (38-75)||(45555376-45555413)
chr2 (41-76)||(21425209-21425244)
chr2 (43-76)||(37725550-37725583)
chr2 (43-76)||(40533250-40533283)
chr2 (44-76)||(490108-490140)
chr2 (44-76)||(36947857-36947889)
chr2 (44-75)||(35292510-35292541)
chr2 (42-76)||(1859925-1859959)
chr2 (42-76)||(7504399-7504433)
chr2 (44-76)||(3724316-3724348)
chr2 (44-76)||(10711277-10711309)
chr2 (44-72)||(21836336-21836364)
[»] scaffold0493 (1 HSPs)
scaffold0493 (40-76)||(1377-1413)
[»] scaffold0017 (1 HSPs)
scaffold0017 (32-76)||(27017-27061)
[»] chr3 (21 HSPs)
chr3 (42-76)||(44500490-44500524)
chr3 (43-76)||(33830529-33830562)
chr3 (32-76)||(55365750-55365795)
chr3 (43-75)||(346689-346721)
chr3 (44-76)||(32719985-32720017)
chr3 (41-72)||(2667481-2667512)
chr3 (44-75)||(48389135-48389166)
chr3 (43-74)||(48925788-48925819)
chr3 (41-76)||(52782534-52782569)
chr3 (41-76)||(52788798-52788833)
chr3 (41-75)||(1326598-1326632)
chr3 (43-73)||(9322811-9322841)
chr3 (40-74)||(32636622-32636656)
chr3 (42-76)||(54008903-54008937)
chr3 (41-74)||(29491660-29491693)
chr3 (43-76)||(35320737-35320770)
chr3 (43-76)||(44962601-44962634)
chr3 (43-76)||(54011141-54011174)
chr3 (44-76)||(7157413-7157445)
chr3 (32-76)||(22830488-22830531)
chr3 (44-76)||(45927220-45927252)
[»] chr8 (11 HSPs)
chr8 (39-76)||(28897278-28897315)
chr8 (32-76)||(29039987-29040031)
chr8 (44-76)||(29565724-29565756)
chr8 (46-76)||(464250-464280)
chr8 (40-74)||(6631282-6631316)
chr8 (41-74)||(10706925-10706958)
chr8 (42-75)||(45393822-45393855)
chr8 (42-74)||(2749683-2749715)
chr8 (32-76)||(5595533-5595576)
chr8 (44-76)||(14914188-14914220)
chr8 (43-75)||(21835430-21835462)
[»] scaffold0239 (1 HSPs)
scaffold0239 (44-76)||(15380-15412)
[»] chr6 (8 HSPs)
chr6 (43-74)||(6016181-6016212)
chr6 (42-76)||(18870920-18870954)
chr6 (32-74)||(23416482-23416524)
chr6 (34-76)||(27719387-27719429)
chr6 (42-76)||(32519107-32519141)
chr6 (43-76)||(9226199-9226232)
chr6 (39-76)||(16989487-16989524)
chr6 (44-76)||(1338853-1338885)
[»] scaffold0349 (1 HSPs)
scaffold0349 (34-76)||(8809-8851)
[»] scaffold0121 (1 HSPs)
scaffold0121 (43-76)||(13602-13635)


Alignment Details
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 103 - 228
Target Start/End: Complemental strand, 33222285 - 33222160
Alignment:
Q  103 gtgtgtgcgagtgttgtaaactctaaggtactgagttcgattcctactacatgtttcaaaactaaccgatttaacttggacattgccttgatagatttgt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33222285 gtgtgtgcgagtgttgtaaactctaaggtactgagttcgattcctactacatgtttcaaaactaaccgatttaacttggacattgccttgatagatttgt 33222186  T
Q  203 ggactatcagttccattgcggtggat 228  Q
    ||| ||||||||||||||||||||||    
T  33222185 ggaatatcagttccattgcggtggat 33222160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 76
Target Start/End: Complemental strand, 7427068 - 7427035
Alignment:
Q  43 aggcaaattctatggtacacccaataaatttggg 76  Q
    ||||||||||||||||||||||||||||||||||    
T  7427068 aggcaaattctatggtacacccaataaatttggg 7427035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 49685984 - 49686017
Alignment:
Q  43 aggcaaattctatggtacacccaataaatttggg 76  Q
    ||||||||||||||||||||||||||||||||||    
T  49685984 aggcaaattctatggtacacccaataaatttggg 49686017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 76
Target Start/End: Complemental strand, 9223262 - 9223230
Alignment:
Q  44 ggcaaattctatggtacacccaataaatttggg 76  Q
    |||||||||||||||||||||||||||||||||    
T  9223262 ggcaaattctatggtacacccaataaatttggg 9223230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 9260228 - 9260192
Alignment:
Q  39 tataaggcaaattctatggtacacccaataaatttgg 75  Q
    ||||||||||||||||||||||||||||| |||||||    
T  9260228 tataaggcaaattctatggtacacccaatgaatttgg 9260192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 76
Target Start/End: Complemental strand, 14131756 - 14131724
Alignment:
Q  44 ggcaaattctatggtacacccaataaatttggg 76  Q
    |||||||||||||||||||||||||||||||||    
T  14131756 ggcaaattctatggtacacccaataaatttggg 14131724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 76
Target Start/End: Complemental strand, 43225052 - 43225020
Alignment:
Q  44 ggcaaattctatggtacacccaataaatttggg 76  Q
    |||||||||||||||||||||||||||||||||    
T  43225052 ggcaaattctatggtacacccaataaatttggg 43225020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 7489369 - 7489326
Alignment:
Q  32 atatatatata-aggcaaattctatggtacacccaataaatttg 74  Q
    ||||||||||| |||||||||||||||||||||||||| |||||    
T  7489369 atatatatatataggcaaattctatggtacacccaatatatttg 7489326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 76
Target Start/End: Complemental strand, 33829275 - 33829240
Alignment:
Q  41 taaggcaaattctatggtacacccaataaatttggg 76  Q
    ||||||||||||||||||||| ||||||||||||||    
T  33829275 taaggcaaattctatggtacatccaataaatttggg 33829240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 76
Target Start/End: Original strand, 33838691 - 33838726
Alignment:
Q  41 taaggcaaattctatggtacacccaataaatttggg 76  Q
    ||||||||||||||||||||| ||||||||||||||    
T  33838691 taaggcaaattctatggtacatccaataaatttggg 33838726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 76
Target Start/End: Complemental strand, 8569381 - 8569351
Alignment:
Q  46 caaattctatggtacacccaataaatttggg 76  Q
    |||||||||||||||||||||||||||||||    
T  8569381 caaattctatggtacacccaataaatttggg 8569351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 14190888 - 14190922
Alignment:
Q  42 aaggcaaattctatggtacacccaataaatttggg 76  Q
    |||||||||| ||||||||||||||||||||||||    
T  14190888 aaggcaaattttatggtacacccaataaatttggg 14190922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 76
Target Start/End: Complemental strand, 28095156 - 28095122
Alignment:
Q  42 aaggcaaattctatggtacacccaataaatttggg 76  Q
    |||||||||||||||||||| ||||||||||||||    
T  28095156 aaggcaaattctatggtacatccaataaatttggg 28095122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 12105577 - 12105536
Alignment:
Q  33 tatatatataaggcaaattctatggtacacccaataaatttg 74  Q
    |||| ||||| ||||||||||||||||||||||||| |||||    
T  12105577 tataaatatatggcaaattctatggtacacccaatatatttg 12105536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 17554227 - 17554194
Alignment:
Q  41 taaggcaaattctatggtacacccaataaatttg 74  Q
    |||||||||||||||||||||||||||| |||||    
T  17554227 taaggcaaattctatggtacacccaatatatttg 17554194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 25493497 - 25493530
Alignment:
Q  43 aggcaaattctatggtacacccaataaatttggg 76  Q
    ||||||||||||||||||| ||||||||||||||    
T  25493497 aggcaaattctatggtacatccaataaatttggg 25493530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 46872368 - 46872401
Alignment:
Q  43 aggcaaattctatggtacacccaataaatttggg 76  Q
    |||||||||||||| |||||||||||||||||||    
T  46872368 aggcaaattctatgatacacccaataaatttggg 46872401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 76
Target Start/End: Complemental strand, 3150596 - 3150560
Alignment:
Q  40 ataaggcaaattctatggtacacccaataaatttggg 76  Q
    |||||| ||||||||||||||| ||||||||||||||    
T  3150596 ataaggtaaattctatggtacatccaataaatttggg 3150560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 66
Target Start/End: Original strand, 33081982 - 33082010
Alignment:
Q  38 atataaggcaaattctatggtacacccaa 66  Q
    |||||||||||||||||||||||||||||    
T  33081982 atataaggcaaattctatggtacacccaa 33082010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 35874347 - 35874315
Alignment:
Q  42 aaggcaaattctatggtacacccaataaatttg 74  Q
    ||||||||||||||||||||||||||| |||||    
T  35874347 aaggcaaattctatggtacacccaatatatttg 35874315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 75
Target Start/End: Complemental strand, 37765662 - 37765630
Alignment:
Q  43 aggcaaattctatggtacacccaataaatttgg 75  Q
    |||||||||||||||| ||||||||||||||||    
T  37765662 aggcaaattctatggtgcacccaataaatttgg 37765630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 44263644 - 44263676
Alignment:
Q  42 aaggcaaattctatggtacacccaataaatttg 74  Q
    ||||||||||||||||||||||||||| |||||    
T  44263644 aaggcaaattctatggtacacccaatatatttg 44263676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 46281934 - 46281966
Alignment:
Q  36 atatataaggcaaattctatggtacacccaata 68  Q
    ||||||| |||||||||||||||||||||||||    
T  46281934 atatatatggcaaattctatggtacacccaata 46281966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 49739139 - 49739175
Alignment:
Q  40 ataaggcaaattctatggtacacccaataaatttggg 76  Q
    |||||||||||||||||||||| || |||||||||||    
T  49739139 ataaggcaaattctatggtacatccgataaatttggg 49739175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 27130962 - 27130918
Alignment:
Q  32 atatatatataaggcaaattctatggtacacccaataaatttggg 76  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  27130962 atatatatatatggcaaattctatggtacacccaataaatttggg 27130918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 3061890 - 3061934
Alignment:
Q  32 atatatatataaggcaaattctatggtacacccaataaatttggg 76  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||    
T  3061890 atatatatatatggcaaattatatggtacacccaataaatttggg 3061934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 76
Target Start/End: Original strand, 1282182 - 1282217
Alignment:
Q  41 taaggcaaattctatggtacacccaataaatttggg 76  Q
    ||||||||||||||||||||||||||||||||||||    
T  1282182 taaggcaaattctatggtacacccaataaatttggg 1282217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 15090667 - 15090700
Alignment:
Q  43 aggcaaattctatggtacacccaataaatttggg 76  Q
    ||||||||||||||||||||||||||||||||||    
T  15090667 aggcaaattctatggtacacccaataaatttggg 15090700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 76
Target Start/End: Original strand, 24505123 - 24505155
Alignment:
Q  44 ggcaaattctatggtacacccaataaatttggg 76  Q
    |||||||||||||||||||||||||||||||||    
T  24505123 ggcaaattctatggtacacccaataaatttggg 24505155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 76
Target Start/End: Original strand, 25866905 - 25866937
Alignment:
Q  44 ggcaaattctatggtacacccaataaatttggg 76  Q
    |||||||||||||||||||||||||||||||||    
T  25866905 ggcaaattctatggtacacccaataaatttggg 25866937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 75
Target Start/End: Complemental strand, 45197212 - 45197180
Alignment:
Q  43 aggcaaattctatggtacacccaataaatttgg 75  Q
    |||||||||||||||||||||||||||||||||    
T  45197212 aggcaaattctatggtacacccaataaatttgg 45197180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 76
Target Start/End: Original strand, 47219956 - 47219988
Alignment:
Q  44 ggcaaattctatggtacacccaataaatttggg 76  Q
    |||||||||||||||||||||||||||||||||    
T  47219956 ggcaaattctatggtacacccaataaatttggg 47219988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 76
Target Start/End: Complemental strand, 42902796 - 42902761
Alignment:
Q  41 taaggcaaattctatggtacacccaataaatttggg 76  Q
    ||||||||||||||||||||||| ||||||||||||    
T  42902796 taaggcaaattctatggtacacctaataaatttggg 42902761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 5583273 - 5583240
Alignment:
Q  41 taaggcaaattctatggtacacccaataaatttg 74  Q
    |||||||||||||||||||||||||||| |||||    
T  5583273 taaggcaaattctatggtacacccaatatatttg 5583240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 75
Target Start/End: Complemental strand, 7574523 - 7574490
Alignment:
Q  42 aaggcaaattctatggtacacccaataaatttgg 75  Q
    |||||||||||||||||||| |||||||||||||    
T  7574523 aaggcaaattctatggtacatccaataaatttgg 7574490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 76
Target Start/End: Complemental strand, 40947381 - 40947348
Alignment:
Q  43 aggcaaattctatggtacacccaataaatttggg 76  Q
    ||||||||||||||||||| ||||||||||||||    
T  40947381 aggcaaattctatggtacatccaataaatttggg 40947348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 75
Target Start/End: Complemental strand, 47069374 - 47069337
Alignment:
Q  38 atataaggcaaattctatggtacacccaataaatttgg 75  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  47069374 atatatggcaaattctatggtacatccaataaatttgg 47069337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 47369628 - 47369596
Alignment:
Q  42 aaggcaaattctatggtacacccaataaatttg 74  Q
    ||||||||||||||||||||||||||| |||||    
T  47369628 aaggcaaattctatggtacacccaatatatttg 47369596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 22798490 - 22798445
Alignment:
Q  32 atatatatata-aggcaaattctatggtacacccaataaatttggg 76  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||    
T  22798490 atatatatatataggcaaattctatggtacacccaataaatttggg 22798445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 76
Target Start/End: Complemental strand, 2148538 - 2148501
Alignment:
Q  39 tataaggcaaattctatggtacacccaataaatttggg 76  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  2148538 tataaggcaaattctttggtacacccaataaatttggg 2148501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 25684072 - 25684105
Alignment:
Q  43 aggcaaattctatggtacacccaataaatttggg 76  Q
    ||||||||||||||||||||||||||||||||||    
T  25684072 aggcaaattctatggtacacccaataaatttggg 25684105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 76
Target Start/End: Original strand, 11758612 - 11758644
Alignment:
Q  44 ggcaaattctatggtacacccaataaatttggg 76  Q
    |||||||||||||||||||||||||||||||||    
T  11758612 ggcaaattctatggtacacccaataaatttggg 11758644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 27353417 - 27353453
Alignment:
Q  40 ataaggcaaattctatggtacacccaataaatttggg 76  Q
    |||||||||||||||||||| ||||||||||||||||    
T  27353417 ataaggcaaattctatggtatacccaataaatttggg 27353453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 76
Target Start/End: Complemental strand, 37314244 - 37314212
Alignment:
Q  44 ggcaaattctatggtacacccaataaatttggg 76  Q
    |||||||||||||||||||||||||||||||||    
T  37314244 ggcaaattctatggtacacccaataaatttggg 37314212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 75
Target Start/End: Complemental strand, 31236996 - 31236965
Alignment:
Q  44 ggcaaattctatggtacacccaataaatttgg 75  Q
    ||||||||||||||||||||||||||||||||    
T  31236996 ggcaaattctatggtacacccaataaatttgg 31236965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 8068735 - 8068693
Alignment:
Q  35 tatatataaggcaaa-ttctatggtacacccaataaatttggg 76  Q
    ||||||||||| ||| |||||||||||||||||||||||||||    
T  8068735 tatatataagggaaaattctatggtacacccaataaatttggg 8068693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 10688392 - 10688425
Alignment:
Q  43 aggcaaattctatggtacacccaataaatttggg 76  Q
    ||||||||||||||||||| ||||||||||||||    
T  10688392 aggcaaattctatggtacatccaataaatttggg 10688425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 76
Target Start/End: Complemental strand, 23189471 - 23189442
Alignment:
Q  47 aaattctatggtacacccaataaatttggg 76  Q
    ||||||||||||||||||||||||||||||    
T  23189471 aaattctatggtacacccaataaatttggg 23189442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 32993736 - 32993703
Alignment:
Q  41 taaggcaaattctatggtacacccaataaatttg 74  Q
    |||||||||||||||||||||||||||| |||||    
T  32993736 taaggcaaattctatggtacacccaatatatttg 32993703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 76
Target Start/End: Original strand, 40340430 - 40340459
Alignment:
Q  47 aaattctatggtacacccaataaatttggg 76  Q
    ||||||||||||||||||||||||||||||    
T  40340430 aaattctatggtacacccaataaatttggg 40340459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 6560815 - 6560851
Alignment:
Q  33 tatatatataaggcaaattctatggtacacccaataa 69  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  6560815 tatataaataagacaaattctatggtacacccaataa 6560851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 76
Target Start/End: Original strand, 15725945 - 15725977
Alignment:
Q  44 ggcaaattctatggtacacccaataaatttggg 76  Q
    |||||||| ||||||||||||||||||||||||    
T  15725945 ggcaaattttatggtacacccaataaatttggg 15725977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 16729711 - 16729755
Alignment:
Q  32 atatatatata-aggcaaattctatggtacacccaataaatttgg 75  Q
    ||||||||||| || |||||||||||||||| |||||||||||||    
T  16729711 atatatatatatagacaaattctatggtacatccaataaatttgg 16729755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 76
Target Start/End: Original strand, 32624176 - 32624208
Alignment:
Q  44 ggcaaattctatggtacacccaataaatttggg 76  Q
    |||||||| ||||||||||||||||||||||||    
T  32624176 ggcaaattttatggtacacccaataaatttggg 32624208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 75
Target Start/End: Complemental strand, 39541127 - 39541095
Alignment:
Q  43 aggcaaattctatggtacacccaataaatttgg 75  Q
    ||||||||||||| |||||||||||||||||||    
T  39541127 aggcaaattctattgtacacccaataaatttgg 39541095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 76
Target Start/End: Complemental strand, 46222406 - 46222369
Alignment:
Q  39 tataaggcaaattctatggtacacccaataaatttggg 76  Q
    ||||||||||||||||||||||||||||||||||||||    
T  46222406 tataaggcaaattctatggtacacccaataaatttggg 46222369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 44998407 - 44998443
Alignment:
Q  40 ataaggcaaattctatggtacacccaataaatttggg 76  Q
    |||||||||||||||||||||||||||||||||||||    
T  44998407 ataaggcaaattctatggtacacccaataaatttggg 44998443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 21514987 - 21515021
Alignment:
Q  42 aaggcaaattctatggtacacccaataaatttggg 76  Q
    |||||||||||||||||||||||||||||||||||    
T  21514987 aaggcaaattctatggtacacccaataaatttggg 21515021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 45629107 - 45629140
Alignment:
Q  43 aggcaaattctatggtacacccaataaatttggg 76  Q
    ||||||||||||||||||||||||||||||||||    
T  45629107 aggcaaattctatggtacacccaataaatttggg 45629140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 76
Target Start/End: Original strand, 2526171 - 2526203
Alignment:
Q  44 ggcaaattctatggtacacccaataaatttggg 76  Q
    |||||||||||||||||||||||||||||||||    
T  2526171 ggcaaattctatggtacacccaataaatttggg 2526203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 76
Target Start/End: Original strand, 24291978 - 24292010
Alignment:
Q  44 ggcaaattctatggtacacccaataaatttggg 76  Q
    |||||||||||||||||||||||||||||||||    
T  24291978 ggcaaattctatggtacacccaataaatttggg 24292010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 76
Target Start/End: Complemental strand, 54505973 - 54505941
Alignment:
Q  44 ggcaaattctatggtacacccaataaatttggg 76  Q
    |||||||||||||||||||||||||||||||||    
T  54505973 ggcaaattctatggtacacccaataaatttggg 54505941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 76
Target Start/End: Original strand, 33612520 - 33612555
Alignment:
Q  41 taaggcaaattctatggtacacccaataaatttggg 76  Q
    ||||||||||||||||||||||||||| ||||||||    
T  33612520 taaggcaaattctatggtacacccaatgaatttggg 33612555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 36569638 - 36569680
Alignment:
Q  33 tatatatataaggcaaattctatggtacacccaataaatttggg 76  Q
    |||||||||| |||||||| ||||||||||||||||||||||||    
T  36569638 tatatatata-ggcaaattatatggtacacccaataaatttggg 36569680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 75
Target Start/End: Complemental strand, 42244944 - 42244913
Alignment:
Q  44 ggcaaattctatggtacacccaataaatttgg 75  Q
    ||||||||||||||||||||||||||||||||    
T  42244944 ggcaaattctatggtacacccaataaatttgg 42244913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 76
Target Start/End: Complemental strand, 46631056 - 46631021
Alignment:
Q  41 taaggcaaattctatggtacacccaataaatttggg 76  Q
    ||||| ||||||||||||||||||||||||||||||    
T  46631056 taaggaaaattctatggtacacccaataaatttggg 46631021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 27967507 - 27967541
Alignment:
Q  42 aaggcaaattctatggtacacccaataaatttggg 76  Q
    ||||||||||||||| |||||||||||||||||||    
T  27967507 aaggcaaattctatgttacacccaataaatttggg 27967541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 48647439 - 48647398
Alignment:
Q  32 atatatatataaggcaaattctatggtacacccaataaatttg 74  Q
    ||||||||||| ||||||||||||||||||||||||| |||||    
T  48647439 atatatatata-ggcaaattctatggtacacccaatatatttg 48647398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 74
Target Start/End: Original strand, 56302829 - 56302863
Alignment:
Q  40 ataaggcaaattctatggtacacccaataaatttg 74  Q
    ||||||||||||||||||||||||||||| |||||    
T  56302829 ataaggcaaattctatggtacacccaatatatttg 56302863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 62
Target Start/End: Complemental strand, 31296935 - 31296907
Alignment:
Q  34 atatatataaggcaaattctatggtacac 62  Q
    |||||||||||||||||||||||||||||    
T  31296935 atatatataaggcaaattctatggtacac 31296907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 52257128 - 52257164
Alignment:
Q  40 ataaggcaaattctatggtacacccaataaatttggg 76  Q
    |||||||||||||||||||| | ||||||||||||||    
T  52257128 ataaggcaaattctatggtatatccaataaatttggg 52257164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 75
Target Start/End: Original strand, 45555376 - 45555413
Alignment:
Q  38 atataaggcaaattctatggtacacccaataaatttgg 75  Q
    ||||||||||||||||||||||||||||||||||||||    
T  45555376 atataaggcaaattctatggtacacccaataaatttgg 45555413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 76
Target Start/End: Original strand, 21425209 - 21425244
Alignment:
Q  41 taaggcaaattctatggtacacccaataaatttggg 76  Q
    ||||||||||||||||||||||||||||||||||||    
T  21425209 taaggcaaattctatggtacacccaataaatttggg 21425244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 37725550 - 37725583
Alignment:
Q  43 aggcaaattctatggtacacccaataaatttggg 76  Q
    ||||||||||||||||||||||||||||||||||    
T  37725550 aggcaaattctatggtacacccaataaatttggg 37725583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 40533250 - 40533283
Alignment:
Q  43 aggcaaattctatggtacacccaataaatttggg 76  Q
    ||||||||||||||||||||||||||||||||||    
T  40533250 aggcaaattctatggtacacccaataaatttggg 40533283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 76
Target Start/End: Complemental strand, 490140 - 490108
Alignment:
Q  44 ggcaaattctatggtacacccaataaatttggg 76  Q
    |||||||||||||||||||||||||||||||||    
T  490140 ggcaaattctatggtacacccaataaatttggg 490108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 76
Target Start/End: Complemental strand, 36947889 - 36947857
Alignment:
Q  44 ggcaaattctatggtacacccaataaatttggg 76  Q
    |||||||||||||||||||||||||||||||||    
T  36947889 ggcaaattctatggtacacccaataaatttggg 36947857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 75
Target Start/End: Original strand, 35292510 - 35292541
Alignment:
Q  44 ggcaaattctatggtacacccaataaatttgg 75  Q
    ||||||||||||||||||||||||||||||||    
T  35292510 ggcaaattctatggtacacccaataaatttgg 35292541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 1859925 - 1859959
Alignment:
Q  42 aaggcaaattctatggtacacccaataaatttggg 76  Q
    |||||||||||||||||||||||||| ||||||||    
T  1859925 aaggcaaattctatggtacacccaatgaatttggg 1859959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 76
Target Start/End: Complemental strand, 7504433 - 7504399
Alignment:
Q  42 aaggcaaattctatggtacacccaataaatttggg 76  Q
    |||||||||||||||||||||||||| ||||||||    
T  7504433 aaggcaaattctatggtacacccaatgaatttggg 7504399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 76
Target Start/End: Complemental strand, 3724348 - 3724316
Alignment:
Q  44 ggcaaattctatggtacacccaataaatttggg 76  Q
    |||||||||||||||||||| ||||||||||||    
T  3724348 ggcaaattctatggtacacctaataaatttggg 3724316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 76
Target Start/End: Original strand, 10711277 - 10711309
Alignment:
Q  44 ggcaaattctatggtacacccaataaatttggg 76  Q
    |||||||||||||||||||| ||||||||||||    
T  10711277 ggcaaattctatggtacacctaataaatttggg 10711309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 72
Target Start/End: Original strand, 21836336 - 21836364
Alignment:
Q  44 ggcaaattctatggtacacccaataaatt 72  Q
    |||||||||||||||||||||||||||||    
T  21836336 ggcaaattctatggtacacccaataaatt 21836364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0493 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0493
Description:

Target: scaffold0493; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 1377 - 1413
Alignment:
Q  40 ataaggcaaattctatggtacacccaataaatttggg 76  Q
    |||||||||||||||||||||||||||||||||||||    
T  1377 ataaggcaaattctatggtacacccaataaatttggg 1413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 27061 - 27017
Alignment:
Q  32 atatatatataaggcaaattctatggtacacccaataaatttggg 76  Q
    ||||||||||| | |||||||||||||||||||||||||||||||    
T  27061 atatatatatatgacaaattctatggtacacccaataaatttggg 27017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 76
Target Start/End: Complemental strand, 44500524 - 44500490
Alignment:
Q  42 aaggcaaattctatggtacacccaataaatttggg 76  Q
    |||||||||||||||||||||||||||||||||||    
T  44500524 aaggcaaattctatggtacacccaataaatttggg 44500490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 33830529 - 33830562
Alignment:
Q  43 aggcaaattctatggtacacccaataaatttggg 76  Q
    ||||||||||||||||||||||||||||||||||    
T  33830529 aggcaaattctatggtacacccaataaatttggg 33830562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 55365795 - 55365750
Alignment:
Q  32 atatatatata-aggcaaattctatggtacacccaataaatttggg 76  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||    
T  55365795 atatatatatataggcaaattctatggtacatccaataaatttggg 55365750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 75
Target Start/End: Original strand, 346689 - 346721
Alignment:
Q  43 aggcaaattctatggtacacccaataaatttgg 75  Q
    |||||||||||||||||||||||||||||||||    
T  346689 aggcaaattctatggtacacccaataaatttgg 346721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 76
Target Start/End: Original strand, 32719985 - 32720017
Alignment:
Q  44 ggcaaattctatggtacacccaataaatttggg 76  Q
    |||||||||||||||||||||||||||||||||    
T  32719985 ggcaaattctatggtacacccaataaatttggg 32720017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 72
Target Start/End: Original strand, 2667481 - 2667512
Alignment:
Q  41 taaggcaaattctatggtacacccaataaatt 72  Q
    ||||||||||||||||||||||||||||||||    
T  2667481 taaggcaaattctatggtacacccaataaatt 2667512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 75
Target Start/End: Complemental strand, 48389166 - 48389135
Alignment:
Q  44 ggcaaattctatggtacacccaataaatttgg 75  Q
    ||||||||||||||||||||||||||||||||    
T  48389166 ggcaaattctatggtacacccaataaatttgg 48389135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 74
Target Start/End: Complemental strand, 48925819 - 48925788
Alignment:
Q  43 aggcaaattctatggtacacccaataaatttg 74  Q
    ||||||||||||||||||||||||||||||||    
T  48925819 aggcaaattctatggtacacccaataaatttg 48925788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 76
Target Start/End: Complemental strand, 52782569 - 52782534
Alignment:
Q  41 taaggcaaattctatggtacacccaataaatttggg 76  Q
    ||||||||||||||||||||| ||||||||||||||    
T  52782569 taaggcaaattctatggtacatccaataaatttggg 52782534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 76
Target Start/End: Complemental strand, 52788833 - 52788798
Alignment:
Q  41 taaggcaaattctatggtacacccaataaatttggg 76  Q
    ||||||||||||||||||||| ||||||||||||||    
T  52788833 taaggcaaattctatggtacatccaataaatttggg 52788798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 75
Target Start/End: Original strand, 1326598 - 1326632
Alignment:
Q  41 taaggcaaattctatggtacacccaataaatttgg 75  Q
    ||||||||||||||||||||||||||| |||||||    
T  1326598 taaggcaaattctatggtacacccaatgaatttgg 1326632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 73
Target Start/End: Complemental strand, 9322841 - 9322811
Alignment:
Q  43 aggcaaattctatggtacacccaataaattt 73  Q
    |||||||||||||||||||||||||||||||    
T  9322841 aggcaaattctatggtacacccaataaattt 9322811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 74
Target Start/End: Original strand, 32636622 - 32636656
Alignment:
Q  40 ataaggcaaattctatggtacacccaataaatttg 74  Q
    ||||||||||||||||||||||||||||| |||||    
T  32636622 ataaggcaaattctatggtacacccaatatatttg 32636656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 54008903 - 54008937
Alignment:
Q  42 aaggcaaattctatggtacacccaataaatttggg 76  Q
    |||||||||||||||||||||||||| ||||||||    
T  54008903 aaggcaaattctatggtacacccaatgaatttggg 54008937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 74
Target Start/End: Original strand, 29491660 - 29491693
Alignment:
Q  41 taaggcaaattctatggtacacccaataaatttg 74  Q
    |||||||||||||||||||||||||||| |||||    
T  29491660 taaggcaaattctatggtacacccaatatatttg 29491693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 76
Target Start/End: Complemental strand, 35320770 - 35320737
Alignment:
Q  43 aggcaaattctatggtacacccaataaatttggg 76  Q
    ||||||||||||||||||||||| ||||||||||    
T  35320770 aggcaaattctatggtacacccactaaatttggg 35320737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 44962601 - 44962634
Alignment:
Q  43 aggcaaattctatggtacacccaataaatttggg 76  Q
    ||||||||||||||||||| ||||||||||||||    
T  44962601 aggcaaattctatggtacatccaataaatttggg 44962634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 54011141 - 54011174
Alignment:
Q  43 aggcaaattctatggtacacccaataaatttggg 76  Q
    ||||||||||||| ||||||||||||||||||||    
T  54011141 aggcaaattctatagtacacccaataaatttggg 54011174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 76
Target Start/End: Complemental strand, 7157445 - 7157413
Alignment:
Q  44 ggcaaattctatggtacacccaataaatttggg 76  Q
    |||||||||||||||||||||||| ||||||||    
T  7157445 ggcaaattctatggtacacccaatgaatttggg 7157413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 22830531 - 22830488
Alignment:
Q  32 atatatatataaggcaaattctatggtacacccaataaatttggg 76  Q
    ||||||||||||| |||||||||||||| ||| ||||||||||||    
T  22830531 atatatatataag-caaattctatggtatacctaataaatttggg 22830488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 76
Target Start/End: Original strand, 45927220 - 45927252
Alignment:
Q  44 ggcaaattctatggtacacccaataaatttggg 76  Q
    |||||||| ||||||||||||||||||||||||    
T  45927220 ggcaaattttatggtacacccaataaatttggg 45927252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 76
Target Start/End: Complemental strand, 28897315 - 28897278
Alignment:
Q  39 tataaggcaaattctatggtacacccaataaatttggg 76  Q
    |||| |||||||||||||||||||||||||||||||||    
T  28897315 tatatggcaaattctatggtacacccaataaatttggg 28897278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 29040031 - 29039987
Alignment:
Q  32 atatatatataaggcaaattctatggtacacccaataaatttggg 76  Q
    ||||||||||| |||||||||||||||||| | ||||||||||||    
T  29040031 atatatatatatggcaaattctatggtacatcaaataaatttggg 29039987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 76
Target Start/End: Complemental strand, 29565756 - 29565724
Alignment:
Q  44 ggcaaattctatggtacacccaataaatttggg 76  Q
    |||||||||||||||||||||||||||||||||    
T  29565756 ggcaaattctatggtacacccaataaatttggg 29565724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 76
Target Start/End: Original strand, 464250 - 464280
Alignment:
Q  46 caaattctatggtacacccaataaatttggg 76  Q
    |||||||||||||||||||||||||||||||    
T  464250 caaattctatggtacacccaataaatttggg 464280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 74
Target Start/End: Complemental strand, 6631316 - 6631282
Alignment:
Q  40 ataaggcaaattctatggtacacccaataaatttg 74  Q
    ||||||||||||||||||||||||||||| |||||    
T  6631316 ataaggcaaattctatggtacacccaatatatttg 6631282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 10706958 - 10706925
Alignment:
Q  41 taaggcaaattctatggtacacccaataaatttg 74  Q
    |||||||||||||||||||||||||||| |||||    
T  10706958 taaggcaaattctatggtacacccaatatatttg 10706925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 75
Target Start/End: Complemental strand, 45393855 - 45393822
Alignment:
Q  42 aaggcaaattctatggtacacccaataaatttgg 75  Q
    |||||||||||||||||||| |||||||||||||    
T  45393855 aaggcaaattctatggtacatccaataaatttgg 45393822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 2749715 - 2749683
Alignment:
Q  42 aaggcaaattctatggtacacccaataaatttg 74  Q
    ||||||||||||||||||||||||||| |||||    
T  2749715 aaggcaaattctatggtacacccaatatatttg 2749683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 5595533 - 5595576
Alignment:
Q  32 atatatatataaggcaaattctatggtacacccaataaatttggg 76  Q
    ||||||||||||| |||||||||||||| ||| ||||||||||||    
T  5595533 atatatatataag-caaattctatggtatacctaataaatttggg 5595576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 76
Target Start/End: Complemental strand, 14914220 - 14914188
Alignment:
Q  44 ggcaaattctatggtacacccaataaatttggg 76  Q
    |||||||||||||||||| ||||||||||||||    
T  14914220 ggcaaattctatggtacatccaataaatttggg 14914188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 75
Target Start/End: Original strand, 21835430 - 21835462
Alignment:
Q  43 aggcaaattctatggtacacccaataaatttgg 75  Q
    |||||||||||||| ||||||||||||||||||    
T  21835430 aggcaaattctatgttacacccaataaatttgg 21835462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0239 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0239
Description:

Target: scaffold0239; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 76
Target Start/End: Original strand, 15380 - 15412
Alignment:
Q  44 ggcaaattctatggtacacccaataaatttggg 76  Q
    |||||||||||||||||||||||||||||||||    
T  15380 ggcaaattctatggtacacccaataaatttggg 15412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 74
Target Start/End: Complemental strand, 6016212 - 6016181
Alignment:
Q  43 aggcaaattctatggtacacccaataaatttg 74  Q
    ||||||||||||||||||||||||||||||||    
T  6016212 aggcaaattctatggtacacccaataaatttg 6016181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 18870920 - 18870954
Alignment:
Q  42 aaggcaaattctatggtacacccaataaatttggg 76  Q
    |||||||||||||||||||| ||||||||||||||    
T  18870920 aaggcaaattctatggtacatccaataaatttggg 18870954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 74
Target Start/End: Original strand, 23416482 - 23416524
Alignment:
Q  32 atatatatataaggcaaattctatggtacacccaataaatttg 74  Q
    ||||||||||| |||||||||||||||||||||| || |||||    
T  23416482 atatatatatatggcaaattctatggtacacccactatatttg 23416524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 76
Target Start/End: Complemental strand, 27719429 - 27719387
Alignment:
Q  34 atatatataaggcaaattctatggtacacccaataaatttggg 76  Q
    |||| ||||||| ||||||||||||||||||||| ||||||||    
T  27719429 atatttataaggtaaattctatggtacacccaatgaatttggg 27719387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 76
Target Start/End: Complemental strand, 32519141 - 32519107
Alignment:
Q  42 aaggcaaattctatggtacacccaataaatttggg 76  Q
    |||||||||| ||||||||||||||||||||||||    
T  32519141 aaggcaaattatatggtacacccaataaatttggg 32519107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 9226199 - 9226232
Alignment:
Q  43 aggcaaattctatggtacacccaataaatttggg 76  Q
    ||||||||||||||||||||||||| ||||||||    
T  9226199 aggcaaattctatggtacacccaatgaatttggg 9226232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 76
Target Start/End: Complemental strand, 16989524 - 16989487
Alignment:
Q  39 tataaggcaaattctatggtacacccaataaatttggg 76  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  16989524 tataagacaaattttatggtacacccaataaatttggg 16989487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 76
Target Start/End: Original strand, 1338853 - 1338885
Alignment:
Q  44 ggcaaattctatggtacacccaataaatttggg 76  Q
    |||||||||||||||||| ||||||||||||||    
T  1338853 ggcaaattctatggtacatccaataaatttggg 1338885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 76
Target Start/End: Complemental strand, 8851 - 8809
Alignment:
Q  34 atatatataaggcaaattctatggtacacccaataaatttggg 76  Q
    |||| ||||||| ||||||||||||||||||||| ||||||||    
T  8851 atatttataaggtaaattctatggtacacccaatgaatttggg 8809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 13602 - 13635
Alignment:
Q  43 aggcaaattctatggtacacccaataaatttggg 76  Q
    ||||||||||||||||||||||||| ||||||||    
T  13602 aggcaaattctatggtacacccaatgaatttggg 13635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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