View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19752_high_1 (Length: 924)

Name: NF19752_high_1
Description: NF19752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19752_high_1
NF19752_high_1
[»] chr7 (5 HSPs)
chr7 (491-924)||(3472910-3473358)
chr7 (1-193)||(3474051-3474244)
chr7 (258-355)||(3473890-3473986)
chr7 (540-613)||(1797266-1797341)
chr7 (475-600)||(557404-557530)
[»] chr3 (4 HSPs)
chr3 (481-557)||(38602879-38602956)
chr3 (474-603)||(54186955-54187085)
chr3 (487-579)||(2335959-2336052)
chr3 (562-613)||(46893461-46893512)
[»] chr8 (3 HSPs)
chr8 (476-603)||(28700578-28700706)
chr8 (471-603)||(33440527-33440660)
chr8 (496-603)||(30085426-30085534)
[»] chr5 (1 HSPs)
chr5 (474-603)||(30892132-30892262)
[»] chr4 (2 HSPs)
chr4 (474-599)||(37306432-37306558)
chr4 (481-593)||(43480277-43480390)
[»] chr2 (2 HSPs)
chr2 (474-591)||(5139996-5140114)
chr2 (474-603)||(6951721-6951852)
[»] chr1 (4 HSPs)
chr1 (502-550)||(42470063-42470111)
chr1 (526-613)||(11709657-11709744)
chr1 (473-603)||(19078936-19079067)
chr1 (473-603)||(19126824-19126955)


Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-137; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 491 - 924
Target Start/End: Complemental strand, 3473358 - 3472910
Alignment:
Q  491 tcttctattaggtgaaactcatgtgaatctcacta-tttatgtgcgattcattttcaaagtgttgtacttatatgaatttcacttaataagagagttagt 589  Q
    ||||||||||||||||||| |||||| |||||||| ||||||||||||  ||||||||||||||||||| ||||| |||||||||||||| ||||| |||    
T  3473358 tcttctattaggtgaaactaatgtgagtctcactactttatgtgcgatcaattttcaaagtgttgtactcatatggatttcacttaataaaagagtgagt 3473259  T
Q  590 ------------gttaaa--aagagtgtctataacacttgtctaaagatttctgatgttgccgaaactacatcgcttctatagttgagattgtgtcgacc 675  Q
                ||||||  || |||||| |||| |||  || |||||||| ||||||||||||||||||| | | |||||||||||||||| |||||||    
T  3473258 atcagagatggtgttaaataaacagtgtccataatactcctcaaaagatttttgatgttgccgaaactacaactcctctatagttgagattgcgtcgacc 3473159  T
Q  676 atatttgaccgcaattctctacgatatcaaagaccgctacacgagttggccactgttcaaaacttggttgtaagcaatgcagctcagctgtgcagaaata 775  Q
    ||||||||||||||||||| ||||||| ||||||  | ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||    
T  3473158 atatttgaccgcaattctccacgatatgaaagactacaacacgagttggccactgtttaaaacttggttgtaagcaatgcagctcagctatgcagaagta 3473059  T
Q  776 gccaaagtaaaaacaagagtggtccctaaattgttcagaaaacggcaaagaacnnnnnnncataggggaagttacacacgtacacatatgcataaaacac 875  Q
    | ||||||||||||||||||||||||||||||||| |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||    
T  3473058 ggcaaagtaaaaacaagagtggtccctaaattgttgagaaaacggcaaagaacaaaaaaacataggggaagttacacacgtacacatatgcataaaacac 3472959  T
Q  876 caacgtttgataaccccacaacacaacactctctctcttctcaaaacac 924  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3472958 caacgtttgataaccccacaacacaacactctctctcttcccaaaacac 3472910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 3474244 - 3474051
Alignment:
Q  1 tcattagctaaaaaacagataattgaagagggggaatacaaatttgactccgacatgaatttgcattcgatcttgattgatcc-tggaatgtgaaccaat 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  3474244 tcattagctaaaaaacagataattgaagagggggaatacaaatttgactccgacatgaatttgcattcgatcttgattgatccatggaatgtgaaccaat 3474145  T
Q  100 ttattcgtttattattccctctaaaagttatatccacagaacatgcatgactcactcattgctcaagctatattgtggtgcaatgttgaggata 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3474144 ttattcgtttattattccctctaaaagttatatccacagaacatgcatgactcactcattgctcaagctatattgtggtgcaatgttgaggata 3474051  T

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Target: chr7; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 258 - 355
Target Start/End: Complemental strand, 3473986 - 3473890
Alignment:
Q  258 gacagatcttaggtggcaactgaagtacgtggaaaatagagatttgagcttcagatggagcctctatggggtcgatctcaatgagtcttactattaca 355  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| | |||||||||||||| |||||||||||||||    
T  3473986 gacagatcttaggtggcaactgaagtacgtgaaaaatagagatttgagcttcaggtggagcctctct-gggtcgatctcaataagtcttactattaca 3473890  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 540 - 613
Target Start/End: Original strand, 1797266 - 1797341
Alignment:
Q  540 attttcaaagtgttgtacttatatgaatttcacttaataagagagttagtgtta--aaaagagtgtctataacact 613  Q
    ||||||||||||| ||||| ||||||| ||||| | |||||||||| |||||||  ||||||||||  ||||||||    
T  1797266 attttcaaagtgtagtactcatatgaacttcaccttataagagagtgagtgttagtaaaagagtgtacataacact 1797341  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 475 - 600
Target Start/End: Original strand, 557404 - 557530
Alignment:
Q  475 tctctttagcactcattcttctattaggtgaaactcatgtgaatctcacta-tttatgtgcgattcattttcaaagtgttgtacttatatgaatttcact 573  Q
    ||||| || ||||||||  |||||| |||||||||||||||  |||||| | |||||||| ||| |||||| || ||||  |||  | ||||||||||      
T  557404 tctctctaacactcattaatctattgggtgaaactcatgtgggtctcaccactttatgtgggatccatttttaatgtgtgatacccacatgaatttcatc 557503  T
Q  574 taataagagagttagtgttaaaaagag 600  Q
     ||||||||||| ||||||| ||||||    
T  557504 caataagagagtgagtgttagaaagag 557530  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 481 - 557
Target Start/End: Complemental strand, 38602956 - 38602879
Alignment:
Q  481 tagcactcattcttctattaggtgaaactcatgtgaatctcacta-tttatgtgcgattcattttcaaagtgttgtac 557  Q
    ||||||||| ||| ||||| |||||||||||||||| |||||||| |||||||| ||| ||||||||| |||| ||||    
T  38602956 tagcactcactctcctattgggtgaaactcatgtgagtctcactactttatgtgggatccattttcaatgtgtggtac 38602879  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 474 - 603
Target Start/End: Original strand, 54186955 - 54187085
Alignment:
Q  474 ctctctttagcactcattcttctattaggtgaaactcatgtgaatctcacta-tttatgtgcgattcattttcaaagtgttgtacttatatgaatttcac 572  Q
    |||||| || || ||| ||| ||||| ||||||||||||||||||||||| | |||||||| ||| |||||  || |||| ||||  | ||||| |||||    
T  54186955 ctctctctaacattcactctcctattgggtgaaactcatgtgaatctcaccattttatgtgggatccatttctaatgtgtggtacccacatgaacttcac 54187054  T
Q  573 ttaataagagagttagtgttaaaaagagtgt 603  Q
      ||||||||||| ||||||| | |||||||    
T  54187055 ccaataagagagtgagtgttagagagagtgt 54187085  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 487 - 579
Target Start/End: Original strand, 2335959 - 2336052
Alignment:
Q  487 tcattcttctattaggtgaaactcatgtgaatctcacta-tttatgtgcgattcattttcaaagtgttgtacttatatgaatttcacttaataa 579  Q
    ||||||| ||||||||| |||||||||||||| |||| | ||||| ||  ||||||||  ||||||| |||||  ||||||||||||| |||||    
T  2335959 tcattctcctattaggtaaaactcatgtgaatttcaccattttatatggaattcatttctaaagtgtggtactcttatgaatttcactcaataa 2336052  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 562 - 613
Target Start/End: Original strand, 46893461 - 46893512
Alignment:
Q  562 atgaatttcacttaataagagagttagtgttaaaaagagtgtctataacact 613  Q
    |||||||||| ||||||||||||| ||||||| | |||||||| ||||||||    
T  46893461 atgaatttcatttaataagagagtgagtgttagagagagtgtccataacact 46893512  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 476 - 603
Target Start/End: Complemental strand, 28700706 - 28700578
Alignment:
Q  476 ctctttagcactcattcttctattaggtgaaactcatgtgaatctcacta-tttatgtgcgattcattttcaaagtgttgtacttatatgaatttcactt 574  Q
    ||||||| |||||| |||||||||  ||||||||||||||| |||||| | |||||||| ||||||||| |||  ||| ||||  | || ||||| ||      
T  28700706 ctctttaacactcactcttctattgagtgaaactcatgtgagtctcaccactttatgtgggattcatttccaatatgtggtacccacataaatttaaccc 28700607  T
Q  575 aataagagagttagtgttaaaaagagtgt 603  Q
    ||||||||||| ||||||| | |||||||    
T  28700606 aataagagagtgagtgttagagagagtgt 28700578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 471 - 603
Target Start/End: Original strand, 33440527 - 33440660
Alignment:
Q  471 attctctctttagcactcattcttctattaggtgaaactcatgtgaatctcacta-tttatgtgcgattcattttcaaagtgttgtacttatatgaattt 569  Q
    ||||||| | || |||||| ||| |||||||||||||||||||||  |||||| | |||||||| ||| ||||| ||| |||| ||||  | |||| |||    
T  33440527 attctctttctaacactcactctcctattaggtgaaactcatgtgggtctcaccactttatgtgggatccatttccaatgtgtggtacccacatgacttt 33440626  T
Q  570 cacttaataagagagttagtgttaaaaagagtgt 603  Q
    |||  ||||||||||| | ||||| | |||||||    
T  33440627 cacccaataagagagtgaatgttagagagagtgt 33440660  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 496 - 603
Target Start/End: Original strand, 30085426 - 30085534
Alignment:
Q  496 tattaggtgaaactcatgtgaatctcacta-tttatgtgcgattcattttcaaagtgttgtacttatatgaatttcacttaataagagagttagtgttaa 594  Q
    |||| ||||||||||||||| ||||||| | |||||||| ||| ||||| |||  |||   ||| | |||||||||||| ||||||||||| |||||||     
T  30085426 tattgggtgaaactcatgtggatctcaccactttatgtgggatccatttccaacatgtgacactcacatgaatttcactcaataagagagtaagtgttag 30085525  T
Q  595 aaagagtgt 603  Q
    | |||||||    
T  30085526 agagagtgt 30085534  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 474 - 603
Target Start/End: Complemental strand, 30892262 - 30892132
Alignment:
Q  474 ctctctttagcactcattcttctattaggtgaaactcatgtgaatctcacta-tttatgtgcgattcattttcaaagtgttgtacttatatgaatttcac 572  Q
    |||||| || |||||| ||| ||||| |||||||||||| ||| |||||| | |||||||| ||| |||||  || |||| ||||  | ||||| |||||    
T  30892262 ctctctctaacactcactctcctattgggtgaaactcatatgagtctcaccattttatgtgggatccatttctaatgtgtggtacccacatgaacttcac 30892163  T
Q  573 ttaataagagagttagtgttaaaaagagtgt 603  Q
      ||||||||||| ||||||| |||||||||    
T  30892162 cgaataagagagtgagtgttagaaagagtgt 30892132  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 474 - 599
Target Start/End: Original strand, 37306432 - 37306558
Alignment:
Q  474 ctctctttagcactcattcttctattaggtgaaactcatgtgaatctcacta-tttatgtgcgattcattttcaaagtgttgtacttatatgaatttcac 572  Q
    |||||| || |||||| |||| |||| |||||||||||||||  |||||| | |||||||| ||| ||||| ||| |||| ||||  | |||||||||||    
T  37306432 ctctctctaacactcactcttatattgggtgaaactcatgtgggtctcaccactttatgtgagatccatttccaatgtgtggtacccacatgaatttcac 37306531  T
Q  573 ttaataagagagttagtgttaaaaaga 599  Q
      ||||||| ||| ||||||| |||||    
T  37306532 ccaataagaaagtgagtgttagaaaga 37306558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 481 - 593
Target Start/End: Complemental strand, 43480390 - 43480277
Alignment:
Q  481 tagcactcattcttctattaggtgaaactcatgtgaatctcacta-tttatgtgcgattcattttcaaagtgttgtacttatatgaatttcacttaataa 579  Q
    ||||| ||| ||| ||||| |||||||||||||||  |||||| | |||||||| ||| ||||||||| |||| ||||  | ||||||||||   |||||    
T  43480390 tagcagtcactctcctattgggtgaaactcatgtgggtctcaccactttatgtgggatccattttcaatgtgtggtacccacatgaatttcagccaataa 43480291  T
Q  580 gagagttagtgtta 593  Q
    || ||| |||||||    
T  43480290 gaaagtgagtgtta 43480277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 474 - 591
Target Start/End: Original strand, 5139996 - 5140114
Alignment:
Q  474 ctctctttagcactcattcttctattaggtgaaactcatgtgaatctcacta-tttatgtgcgattcattttcaaagtgttgtacttatatgaatttcac 572  Q
    |||||| || |||||| ||| ||||| ||||||||||||| |  | |||| | |||||||| ||| ||||||||| |||| ||||  | |||||||||||    
T  5139996 ctctctctaacactcactctcctattgggtgaaactcatgcgggtttcaccactttatgtgggatccattttcaatgtgtggtacccacatgaatttcac 5140095  T
Q  573 ttaataagagagttagtgt 591  Q
    | ||||||||||| |||||    
T  5140096 tcaataagagagtgagtgt 5140114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 474 - 603
Target Start/End: Complemental strand, 6951852 - 6951721
Alignment:
Q  474 ctctctttagcactcattcttctattaggtgaaactcatgtgaatctcacta-tttatgtgcgattcattttcaaagtgttgtacttatatgaattt-ca 571  Q
    ||||||||| ||||||   | ||||| | |||||||||||||  |||||| | |||||||| ||| ||||||||| |||| | ||  | |||||||| ||    
T  6951852 ctctctttaacactcaccttcctattggatgaaactcatgtgggtctcaccactttatgtgggatccattttcaatgtgtggcacccacatgaattttca 6951753  T
Q  572 cttaataagagagttagtgttaaaaagagtgt 603  Q
    || ||||||||||||||||| | |||||||||    
T  6951752 ctcaataagagagttagtgtcacaaagagtgt 6951721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 502 - 550
Target Start/End: Original strand, 42470063 - 42470111
Alignment:
Q  502 gtgaaactcatgtgaatctcactatttatgtgcgattcattttcaaagt 550  Q
    ||||||||||||||||| ||| |||||||||| |||||||||| |||||    
T  42470063 gtgaaactcatgtgaatttcattatttatgtgtgattcatttttaaagt 42470111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 526 - 613
Target Start/End: Original strand, 11709657 - 11709744
Alignment:
Q  526 tttatgtgcgattcattttcaaagtgttgtacttatatgaatttcacttaataagagagttagtgttaaaaagagtgtctataacact 613  Q
    |||||||| ||| ||||| ||| |||| ||||  | |||||||||||| ||||||||||| ||||||| | |||||||| ||| ||||    
T  11709657 tttatgtgggatccatttccaatgtgtggtacccacatgaatttcactcaataagagagtgagtgttagagagagtgtccatagcact 11709744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 473 - 603
Target Start/End: Complemental strand, 19079067 - 19078936
Alignment:
Q  473 tctctctttagcactcattcttctattaggtgaaactcatgtgaatctcacta-tttatgtgcgattcattttcaaagtgttgtacttatatgaatttca 571  Q
    ||||| |||| |||||| ||| ||||| |||||||||||||||  |||||| | |||||||| ||| ||||| ||| |||| ||||    |||| |||||    
T  19079067 tctctttttaacactcactctcctattgggtgaaactcatgtgggtctcaccactttatgtgggatccatttccaatgtgtggtacccgcatgactttca 19078968  T
Q  572 cttaataagagagttagtgttaaaaagagtgt 603  Q
    |  ||||||||||| ||||||| | |||||||    
T  19078967 cccaataagagagtgagtgttagagagagtgt 19078936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 473 - 603
Target Start/End: Complemental strand, 19126955 - 19126824
Alignment:
Q  473 tctctctttagcactcattcttctattaggtgaaactcatgtgaatctcacta-tttatgtgcgattcattttcaaagtgttgtacttatatgaatttca 571  Q
    ||||| |||| |||||| ||| ||||| |||||||||||||||  |||||| | |||||||| ||| ||||| ||| |||| ||||    |||| |||||    
T  19126955 tctctttttaacactcactctcctattgggtgaaactcatgtgggtctcaccactttatgtgggatccatttccaatgtgtggtacccgcatgactttca 19126856  T
Q  572 cttaataagagagttagtgttaaaaagagtgt 603  Q
    |  ||||||||||| ||||||| | |||||||    
T  19126855 cccaataagagagtgagtgttagagagagtgt 19126824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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