View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19752_high_9 (Length: 302)
Name: NF19752_high_9
Description: NF19752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19752_high_9 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 103 - 302
Target Start/End: Original strand, 29355232 - 29355431
Alignment:
| Q |
103 |
ctaagctctactgaaccaagttcggatagagtctaccaagaagagatccgaaataccggccaaggaggagcggtggatcatgagatcaatgctagaataa |
202 |
Q |
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| T |
29355232 |
ctaagctctactgaaccaagttcggacagagtctaccaagaagaggtccgaaataccgaccaaggaggagcggtggatcatgagatcaatgctagaataa |
29355331 |
T |
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| Q |
203 |
acttctaacttagttaggaagtttgcacaactattttctttccgaaatgatgcaaatatgtcaatcttgattaagactttttgtcttagatcatcataac |
302 |
Q |
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| T |
29355332 |
acttctaacttagttaggaagtttgcacaactattttctttccgaaatgatgcaaatatgtcaatcttgattaagactttttgtcttagatcatcgtaac |
29355431 |
T |
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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 29355136 - 29355180
Alignment:
| Q |
8 |
cgaagaatataatgtttgacaatggtagaaaacccctttttggtt |
52 |
Q |
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| T |
29355136 |
cgaagaatataatgtttgacaatggtagaaaacccctttttggtt |
29355180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 33256771 - 33256711
Alignment:
| Q |
182 |
atgagatcaatgctagaataaacttctaacttagttaggaagtttgcacaactattttctt |
242 |
Q |
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| T |
33256771 |
atgagatcaatgctaaaagaaacttctaacttagcaacgaagtatgtataactattttctt |
33256711 |
T |
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