View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19753_high_10 (Length: 239)

Name: NF19753_high_10
Description: NF19753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19753_high_10
NF19753_high_10
[»] chr5 (3 HSPs)
chr5 (16-83)||(24180571-24180638)
chr5 (107-156)||(24180492-24180541)
chr5 (107-156)||(21149234-21149283)
[»] chr6 (2 HSPs)
chr6 (107-156)||(18242895-18242944)
chr6 (16-83)||(18242797-18242864)


Alignment Details
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 24180638 - 24180571
Alignment:
Q  16 atcttcatatatttactgatgtgcatctctacacttttccatctcttcatctctttgttcatatgaca 83  Q
    |||||||| | |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  24180638 atcttcatctctttactgatgtgcatctctacacttccccatctcttcatctctttgttcatatgaca 24180571  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 107 - 156
Target Start/End: Complemental strand, 24180541 - 24180492
Alignment:
Q  107 aatctagatcaatagcaggagtatgcttttcatgttcaattcaattttgc 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24180541 aatctagatcaatagcaggagtatgcttttcatgttcaattcaattttgc 24180492  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 156
Target Start/End: Complemental strand, 21149283 - 21149234
Alignment:
Q  107 aatctagatcaatagcaggagtatgcttttcatgttcaattcaattttgc 156  Q
    |||||||||||||  || | ||||||||||||||||||||||||||||||    
T  21149283 aatctagatcaatgacaagcgtatgcttttcatgttcaattcaattttgc 21149234  T

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Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 107 - 156
Target Start/End: Original strand, 18242895 - 18242944
Alignment:
Q  107 aatctagatcaatagcaggagtatgcttttcatgttcaattcaattttgc 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18242895 aatctagatcaatagcaggagtatgcttttcatgttcaattcaattttgc 18242944  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 18242797 - 18242864
Alignment:
Q  16 atcttcatatatttactgatgtgcatctctacacttttccatctcttcatctctttgttcatatgaca 83  Q
    |||||||| | ||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  18242797 atcttcatctctttgctgatgtgcatctctacacttccccatctcttcatctctttgttcatatgaca 18242864  T

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