View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19753_high_2 (Length: 589)
Name: NF19753_high_2
Description: NF19753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19753_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 473; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 20 - 543
Target Start/End: Original strand, 26746470 - 26746995
Alignment:
| Q |
20 |
gactccctattcgtcagtgttgtcaattgcagatcgcggaaactagcagtctgttcaaattatgatacgctatatcacatctgttgatgctatttgacaa |
119 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26746470 |
gactccctatttgtcagtgttgtcaattgcagatcgcggaaactagcagtctgttcaaattatgatacgctatatcacatctgttgatgctatttgacaa |
26746569 |
T |
|
| Q |
120 |
cagtttgttttaaatagagtattgcagaacagtagtgatttgttaagattcgactacgcagtagcgttaatatagctgctatttgacaacactgctattc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26746570 |
cagtttgttttaaatagagtattgcagaacagtagtgatttgttaagattcgactacgcagtagcgttaatatagctgctatttgacaacactgctattc |
26746669 |
T |
|
| Q |
220 |
gtttatattgattgtatatttatgtttttcctttcttacggtagaatgattacaggttatggtggtttttatggagagcaagaaaatcaaggatattatg |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26746670 |
gtttatattgattgtatatttatgtttttcctttcttacggtagaatgattacaggttatggtggtttttatggagagcaagaaaatcaaggatattatg |
26746769 |
T |
|
| Q |
320 |
ttggtgctgatgctatggattttcagtatcctgtaagtttcctgagctggtttatggnnnnnnngtcatg-ataattttgttattat-ggttcagtcttt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||| |||||||||||| |
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| T |
26746770 |
ttggtgctgatgctatggattttcagtatcctgtaagtttcctgagctggtttatgttttttttgtcatgaataattgtgttattatgggttcagtcttt |
26746869 |
T |
|
| Q |
418 |
ctatgtggttgacttattgcatatctggtcaattcagtctatgaatgtgatgcttgtataaatacttgaatctgataattttcattgcattaggcaagtc |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
26746870 |
ctatgtggttgacttattgcatatctggtcaattcagtctatgaatgtgatgcttgtataaatacatgaatctgataattttcattgcattaggcaagtc |
26746969 |
T |
|
| Q |
518 |
tttagaatcatattccatcatttcat |
543 |
Q |
| |
|
|||||||||||||||||||||||||| |
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| T |
26746970 |
tttagaatcatattccatcatttcat |
26746995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 38766710 - 38766756
Alignment:
| Q |
34 |
cagtgttgtcaattgcagatcgcggaaactagcagtctgttcaaatt |
80 |
Q |
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|||||||||||||||||||||||| ||| |||| || |||||||||| |
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| T |
38766710 |
cagtgttgtcaattgcagatcgcgtaaaatagcggtttgttcaaatt |
38766756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 47789223 - 47789183
Alignment:
| Q |
109 |
ctatttgacaacagtttgttttaaatagagtattgcagaac |
149 |
Q |
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|
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| T |
47789223 |
ctatttgacaacagtttgtactaaatagagtattgcagaac |
47789183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 163
Target Start/End: Original strand, 2843583 - 2843636
Alignment:
| Q |
110 |
tatttgacaacagtttgttttaaatagagtattgcagaacagtagtgatttgtt |
163 |
Q |
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|||||||||||| ||||| ||||||| |||| |||||||| |||||||||||| |
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| T |
2843583 |
tatttgacaacattttgtactaaatagtgtatcgcagaacaatagtgatttgtt |
2843636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 78
Target Start/End: Original strand, 41376284 - 41376323
Alignment:
| Q |
39 |
ttgtcaattgcagatcgcggaaactagcagtctgttcaaa |
78 |
Q |
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||||||||||||||||||||||| ||||||| |||||||| |
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| T |
41376284 |
ttgtcaattgcagatcgcggaaaatagcagtttgttcaaa |
41376323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 80
Target Start/End: Original strand, 34925253 - 34925295
Alignment:
| Q |
38 |
gttgtcaattgcagatcgcggaaactagcagtctgttcaaatt |
80 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||| |||||||||| |
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|
| T |
34925253 |
gttgtcaattgcagatcgtggaaaatagcagtttgttcaaatt |
34925295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 61
Target Start/End: Complemental strand, 12197056 - 12197028
Alignment:
| Q |
33 |
tcagtgttgtcaattgcagatcgcggaaa |
61 |
Q |
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| T |
12197056 |
tcagtgttgtcaattgcagatcgcggaaa |
12197028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 61
Target Start/End: Complemental strand, 12441484 - 12441456
Alignment:
| Q |
33 |
tcagtgttgtcaattgcagatcgcggaaa |
61 |
Q |
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|
||||||||||||||||||||||||||||| |
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|
| T |
12441484 |
tcagtgttgtcaattgcagatcgcggaaa |
12441456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 2457357 - 2457313
Alignment:
| Q |
36 |
gtgttgtcaattgcagatcgcggaaactagcagtctgttcaaatt |
80 |
Q |
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||||||||||| ||||||||| |||| ||||||| |||||||||| |
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| T |
2457357 |
gtgttgtcaatcgcagatcgcagaaaatagcagtttgttcaaatt |
2457313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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