View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19753_low_1 (Length: 691)
Name: NF19753_low_1
Description: NF19753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19753_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 43 - 491
Target Start/End: Complemental strand, 56165629 - 56165181
Alignment:
| Q |
43 |
ctgaaggaagatgtttacaggctgcaaagtcagtgcaatgtcatgcaagcacatatggaaaagatggttgagaagaagaaaggtttctttaaatggaaga |
142 |
Q |
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| T |
56165629 |
ctgaaggaagatgtttacaggctgcaaagtcagtgcaatgtcatgcaagcacatatggaaaagatggttgagaagaagaaaggtttctttaaatggaaga |
56165530 |
T |
|
| Q |
143 |
aacttgcttttagtaaaagcattggtggcgagatggagaatgttgaacaacatgaagctgaaactgaatttcgatttggaaggcaaaacacaccaacaga |
242 |
Q |
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| T |
56165529 |
aacttgcttttagtaaaagcattggtggcgagatggagaatgttgaacaacatgaagctgaaactgaatttcgatttggaaggcaaaacacaccaacaga |
56165430 |
T |
|
| Q |
243 |
cttggtgtaaaccaatatgctattaacctccaaagttccacttcttaattaaatctctttccttactatattgaacccaaaattctgctgcaagctctgt |
342 |
Q |
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| T |
56165429 |
cttggtgtaaaccaatatgctattaacctccaaagttccacttcttaattaaatctctttccttactatattgaacccaaaattctgctgcaagctctgt |
56165330 |
T |
|
| Q |
343 |
caatcgcttaaccgcacgaacaaaacaagaggaatcgcagcagtcacaccaatccaaatggtcctaatgctggtaggaatgaaaccaggcctgtaatatt |
442 |
Q |
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| T |
56165329 |
caatcgcttaaccgcacgaacaaaacaagaggaatcgcagcagtcacaccaatccaaatggtcctaatgctggtaggaatgaaaccaggcctgtaatatt |
56165230 |
T |
|
| Q |
443 |
gaaaattctgtacttattatccattcaataacttcgcaaaaattagaat |
491 |
Q |
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| T |
56165229 |
gaaaattctgtacttattatccattcaataacttcgcaaaaattagaat |
56165181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 133; Significance: 8e-69; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 43 - 229
Target Start/End: Complemental strand, 44263891 - 44263708
Alignment:
| Q |
43 |
ctgaaggaagatgtttacaggctgcaaagtcagtgcaatgtcatgcaagcacatatggaaaagatggttgagaagaagaaaggtttctttaaatggaaga |
142 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||| ||||||||||||| ||||||| |||||||||| |
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| T |
44263891 |
ctgaaggaagatgtttacaggctgcagagtcagtgcaatgtcatgcaagcacagatggacaagatggctgagaagaagaaaagtttcttcaaatggaaga |
44263792 |
T |
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| Q |
143 |
aacttgcttttagtaaaagcattggtggcgagatggagaatgttgaacaacatgaagctgaaactgaatttcgatttggaaggcaaa |
229 |
Q |
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| T |
44263791 |
aacttgcttttagtaaaagcat---cggagagatggagaatgttgaacaagatgaagctgaaactgaatttggatttggaaggcaaa |
44263708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 225 - 573
Target Start/End: Complemental strand, 44262911 - 44262575
Alignment:
| Q |
225 |
gcaaaacacaccaacagacttggtgtaaaccaatatgctatt-aacctccaaagttccacttcttaattaaatctctttccttactatattgaacccaaa |
323 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| || |||| ||||| ||||||||||||||||||||||| |
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| T |
44262911 |
gcaaaacacaccaacagacttggtgtaaaccaatatgctatttaacctccaaagctcctctccttag----atctccttccttactatattgaacccaaa |
44262816 |
T |
|
| Q |
324 |
attctgctgcaagctctgtcaatcgcttaaccgcacgaacaaaacaagaggaatcgcagcagtcacaccaatccaaatggtcctaatgctggtaggaatg |
423 |
Q |
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| T |
44262815 |
actctgctgcaagctctgtaaatcgcttaactacacaaacagaacaacaacaattgcagtagtcatgccaaaccagactgtcctaatgcttgtaggaatg |
44262716 |
T |
|
| Q |
424 |
aaaccaggcctgtaatattgaaaattctgtacttattatccattcaataact--tcgcaaaaattagaataatcatattccaatccatccgataactgaa |
521 |
Q |
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||| |||||| || | ||||| ||| |||||||||| |||||| | || || |||||| |||| |||||| |||||||||||||||||| |
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| T |
44262715 |
aaagcaggcc----atgt-----attctatac---ttatccattcgataactacttgcgaagattagagtaattctattcctatccatccgataactgaa |
44262628 |
T |
|
| Q |
522 |
atgggacttaaa-atacacatacatcccaccaattagtaacataacaaaccaa |
573 |
Q |
| |
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|||||||||||| |||||||||||||||| |||||| | ||||||||||||| |
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| T |
44262627 |
atgggacttaaagatacacatacatcccatcaattaatggcataacaaaccaa |
44262575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 305 - 339
Target Start/End: Complemental strand, 44259687 - 44259653
Alignment:
| Q |
305 |
ttactatattgaacccaaaattctgctgcaagctc |
339 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
44259687 |
ttacgatattgaacccaaaattctgctgcaagctc |
44259653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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