View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19753_low_14 (Length: 201)
Name: NF19753_low_14
Description: NF19753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19753_low_14 |
 | |
|
| [»] chr2 (5 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 11104242 - 11104442
Alignment:
| Q |
1 |
ctgtttcttgtgctgatattcttactattgcagctgaagtatcttctattctggtatgtttttaatttcataaactttatatggtcactagtaatatttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
11104242 |
ctgtttcttgtgctgatattcttactattgcagctgaagtatcttctattctggtatgtttttaatttcataaactttatatggtcactagtaatttttg |
11104341 |
T |
|
| Q |
101 |
cttctcaaatatccatcttaaaatcatctaatatatattgatctatgaacagggaggaggtccctcatggccaattccattgggaagaagggatagctta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11104342 |
cttctcaaatatccatcttaaaatcatctaatatatattgatctatgaacagggaggaggtccctcatggccaattccattgggaagaagggatagctta |
11104441 |
T |
|
| Q |
201 |
a |
201 |
Q |
| |
|
| |
|
|
| T |
11104442 |
a |
11104442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 11097351 - 11097419
Alignment:
| Q |
133 |
atatattgatctatgaacagggaggaggtccctcatggccaattccattgggaagaagggatagcttaa |
201 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
11097351 |
atatattggtttatgaacagggaggaggtccctcatggcaaattccattgggaagaagggatagtttaa |
11097419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 11095783 - 11095844
Alignment:
| Q |
1 |
ctgtttcttgtgctgatattcttactattgcagctgaagtatcttctattctggtatgtttt |
62 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| |
|
|
| T |
11095783 |
ctgtttcttgtgctgatattcttactattgcagctcaagtagcttctgttctggtatgtttt |
11095844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 11171313 - 11171372
Alignment:
| Q |
1 |
ctgtttcttgtgctgatattcttactattgcagctgaagtatcttctattctggtatgtt |
60 |
Q |
| |
|
||||||||||||||||||||||| || |||| |||||| | || ||| |||||||||||| |
|
|
| T |
11171313 |
ctgtttcttgtgctgatattcttgctcttgctgctgaaatttcctctgttctggtatgtt |
11171372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 56
Target Start/End: Original strand, 11118243 - 11118296
Alignment:
| Q |
3 |
gtttcttgtgctgatattcttactattgcagctgaagtatcttctattctggta |
56 |
Q |
| |
|
|||||||||||||||||||| || ||||||||| ||||||||| |||||||| |
|
|
| T |
11118243 |
gtttcttgtgctgatattctcacacttgcagctggagtatcttcagttctggta |
11118296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University