View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19753_low_3 (Length: 514)
Name: NF19753_low_3
Description: NF19753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19753_low_3 |
 | |
|
| [»] scaffold0125 (1 HSPs) |
| | |
|
| [»] scaffold0860 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0125 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: scaffold0125
Description:
Target: scaffold0125; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 15 - 498
Target Start/End: Original strand, 18770 - 19253
Alignment:
| Q |
15 |
aatattttgatacccaagttaggagaagggacaaagtacactcataaaaacaaaacatcaccacaaaatgtcaaaatattaaaggtaatcaaactaaagt |
114 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
18770 |
aatattttgatacccgagttaggagaagggacaaagtacactcataaaaacaaaacatgaccacaaaatgtcaaaatattgaaggtaatcaaactaaagt |
18869 |
T |
|
| Q |
115 |
ttatcaccaatccacctagtagttaccgagataagtttaccatctatccacttagtagttaccaacataaagttgtctaaaatataaaagaccatgatat |
214 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18870 |
ttatcaccaatccacctagtagttaccaagataagtttaccatcgatccacttagtagttaccaacataaagttgtctaaaatataaaagaccatgatat |
18969 |
T |
|
| Q |
215 |
gttttatctaacaaaatataccaaaataaaggtaatcaagctaaaattcatctatctagttgttaccattatcaccctctccttcctgctgaattgaagt |
314 |
Q |
| |
|
|||||||||||||||| ||||||||||||| | || ||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
18970 |
gttttatctaacaaaagataccaaaataaaagcaaccaagctaaagttcatctatctaattgttaccattatcaccctctccttcctgctgcattgaagt |
19069 |
T |
|
| Q |
315 |
gttcatattaggatcaatatacccaatcatttgctccaagcgctccgtcttctgttttagcgtttcttgttcaagatttttcttttcaagttcagtgctt |
414 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||| | || |
|
|
| T |
19070 |
gttcatattaggcacaatattcccaatcatttgctccaagcgctccatcttctgttttagcgtttcttgttcaaaaattttcttttcaagttcagcggtt |
19169 |
T |
|
| Q |
415 |
aatgcttcaattttagcctccatagcagcaacttttttcgaagaagctacatcggtagaaattgaaggcgatggtatcaaagat |
498 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
19170 |
aatgcttcaattttagcctccatagcagcaactttttccgaagaagctacatcggttgaaattgaaggcgatggtctcaaagat |
19253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 285; Significance: 1e-159; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 86 - 498
Target Start/End: Complemental strand, 13408274 - 13407862
Alignment:
| Q |
86 |
caaaatattaaaggtaatcaaactaaagtttatcaccaatccacctagtagttaccgagataagtttaccatctatccacttagtagttaccaacataaa |
185 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
13408274 |
caaaatattaaaggtaactaaactaaagtttatcatcaatccacctagtagttaccaagataagtttaccatcaatccacttagtagttaccaacataaa |
13408175 |
T |
|
| Q |
186 |
gttgtctaaaatataaaagaccatgatatgttttatctaacaaaatataccaaaataaaggtaatcaagctaaaattcatctatctagttgttaccatta |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| | || ||||||||| ||| ||||||||||||| ||||||| |
|
|
| T |
13408174 |
gttgtctaaaatataaaagaccatgatatgtttgatctaacaaaagataccaaaataaaagcaaccaagctaaagttcttctatctagttgtcaccatta |
13408075 |
T |
|
| Q |
286 |
tcaccctctccttcctgctgaattgaagtgttcatattaggatcaatatacccaatcatttgctccaagcgctccgtcttctgttttagcgtttcttgtt |
385 |
Q |
| |
|
||||| |||||||| || |||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13408074 |
tcaccttctccttctggcagaattgaagtgttcatattaggcacaatattcccaatcatttgctccaagcgctccatcttctgttttagcgtttcttgtt |
13407975 |
T |
|
| Q |
386 |
caagatttttcttttcaagttcagtgcttaatgcttcaattttagcctccatagcagcaacttttttcgaagaagctacatcggtagaaattgaaggcga |
485 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||||| ||| ||||||||||||||||||||| ||||||| |||||||||||||||||| | || |
|
|
| T |
13407974 |
caagatttttcttttcaagttcagcggttaatgcttcaatcttatcctccatagcagcaactttttcagaagaaggtacatcggtagaaattgagcgtga |
13407875 |
T |
|
| Q |
486 |
tggtatcaaagat |
498 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
13407874 |
tggtctcaaagat |
13407862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 86 - 479
Target Start/End: Original strand, 13532118 - 13532515
Alignment:
| Q |
86 |
caaaatattaaaggtaatcaaactaaagtttatcaccaatccacctagtagttaccgagataagtttaccatctatccacttagtagttaccaacataaa |
185 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
13532118 |
caaaatattaaaggtaactaaactaaagtttatcatcaatccacctagtagttaccaagataagtttaccatcaatccacttagtagttactaacataaa |
13532217 |
T |
|
| Q |
186 |
gttgtctaaaatataaaagaccatgatatgttttatctaacaaaatataccaaaataaaggtaatcaa----gctaaaattcatctatctagttgttacc |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| | || ||| |||||| ||||||||||||||||| ||| |
|
|
| T |
13532218 |
gttgtctaaaatataaaagaccatgatatgtttgatctaacaaaagataccaaaataaaagcaaccaattaagctaaagttcatctatctagttgtcacc |
13532317 |
T |
|
| Q |
282 |
attatcaccctctccttcctgctgaattgaagtgttcatattaggatcaatatacccaatcatttgctccaagcgctccgtcttctgttttagcgtttct |
381 |
Q |
| |
|
||||||||| ||||||||| || |||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||| |||||||| |||||| |
|
|
| T |
13532318 |
attatcaccttctccttccggcagaattgaagtgttcatattaggcacaatattcccaatcatttgctccaagcgctccatcttttgttttagtgtttct |
13532417 |
T |
|
| Q |
382 |
tgttcaagatttttcttttcaagttcagtgcttaatgcttcaattttagcctccatagcagcaacttttttcgaagaagctacatcggtagaaattga |
479 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||| |||||||| ||||||| |||||||||||||||||| |
|
|
| T |
13532418 |
tgttcaagatttttcttttcaagttcagcggttaatgcttcaatcttagcctccatagcagtaactttttcagaagaaggtacatcggtagaaattga |
13532515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 147 - 436
Target Start/End: Original strand, 7471457 - 7471746
Alignment:
| Q |
147 |
aagtttaccatctatccacttagtagttaccaacataaagttgtctaaaatataaaagaccatgatatgttttatctaacaaaatataccaaaataaagg |
246 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||||||||| | |
|
|
| T |
7471457 |
aagtttaccatcaatccacttagtagttaccaacataaagttgtctaaaatctaaaagacaatgatatgtttgatctaacaaaagataccaaaataaaag |
7471556 |
T |
|
| Q |
247 |
taatcaagctaaaattcatctatctagttgttaccattatcaccctctccttcctgctgaattgaagtgttcatattaggatcaatatacccaatcattt |
346 |
Q |
| |
|
|| ||||||||| ||||||||||| ||||| |||||||||||| ||||||||| | ||||||||||||||||||| | |||||| ||||||||||| |
|
|
| T |
7471557 |
caaccaagctaaagttcatctatcttgttgtcaccattatcaccttctccttccggtataattgaagtgttcatattatgcacaatattcccaatcattt |
7471656 |
T |
|
| Q |
347 |
gctccaagcgctccgtcttctgttttagcgtttcttgttcaagatttttcttttcaagttcagtgcttaatgcttcaattttagcctcca |
436 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||||| |
|
|
| T |
7471657 |
gctccaagcgctccatcttctgttttagcgtttcttgttcaagatttttcttttcaagttcagcggttaatgcttcaatcttagcctcca |
7471746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 86 - 479
Target Start/End: Original strand, 12815260 - 12815657
Alignment:
| Q |
86 |
caaaatattaaaggtaatcaaactaaagtttatcaccaatccacctagtagttaccgagataagtttaccatctatccacttagtagttaccaacataaa |
185 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
12815260 |
caaaatattaaaggtaactaaactaaagtttatcatcaatccacctagtagttaccaagataagtttaccatcaatccacttagtagttactaacataaa |
12815359 |
T |
|
| Q |
186 |
gttgtctaaaatataaaagaccatgatatgttttatctaacaaaatataccaaaataaaggtaatcaa----gctaaaattcatctatctagttgttacc |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| | || ||| |||||| ||||||||||||||||| ||| |
|
|
| T |
12815360 |
gttgtctaaaatataaaagaccatgatatgtttgatctaacaaaagataccaaaataaaagcaaccaattaagctaaagttcatctatctagttgtcacc |
12815459 |
T |
|
| Q |
282 |
attatcaccctctccttcctgctgaattgaagtgttcatattaggatcaatatacccaatcatttgctccaagcgctccgtcttctgttttagcgtttct |
381 |
Q |
| |
|
||||||||| ||||||||| || |||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
12815460 |
attatcaccttctccttccggcagaattgaagtgttcatattaggcacaatattcccaatcatttgctccaagcgctccatcttttgttttagcgtttct |
12815559 |
T |
|
| Q |
382 |
tgttcaagatttttcttttcaagttcagtgcttaatgcttcaattttagcctccatagcagcaacttttttcgaagaagctacatcggtagaaattga |
479 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||||||| ||||||| |||||| ||||||||||| |
|
|
| T |
12815560 |
tgttcaagatttttcttttcaagttcagcggttaatgcttcaatcttagcctccatagcagcaacttttttagaagaaggtacatcagtagaaattga |
12815657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 147 - 498
Target Start/End: Original strand, 13496401 - 13496748
Alignment:
| Q |
147 |
aagtttaccatctatccacttagtagttaccaacataaagttgtctaaaatataaaagaccatgatatgttttatctaacaaaatataccaaaataaagg |
246 |
Q |
| |
|
||||||| |||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| | |
|
|
| T |
13496401 |
aagtttatcatcaatccacctaatagttaccaacataaagttgtctaaaatataaaagaccatgatatgtttgatctaacaaaagataccaaaaa----g |
13496496 |
T |
|
| Q |
247 |
taatcaagctaaaattcatctatctagttgttaccattatcaccctctccttcctgctgaattgaagtgttcatattaggatcaatatacccaatcattt |
346 |
Q |
| |
|
|| ||||||||| ||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||| |||| |
|
|
| T |
13496497 |
caaccaagctaaagttcatctatcttgttgttgatgttatcaccctctccttcctgttgaattgaagtgttcatattaggcacaatattcccaataattt |
13496596 |
T |
|
| Q |
347 |
gctccaagcgctccgtcttctgttttagcgtttcttgttcaagatttttcttttcaagttcagtgcttaatgcttcaattttagcctccatagcagcaac |
446 |
Q |
| |
|
||| |||||||||| |||||||| |||| ||||||||||||||||||||||||| ||||||| | |||||||||||||||||||| ||||| ||||||| |
|
|
| T |
13496597 |
gcttcaagcgctccatcttctgtcttagtgtttcttgttcaagatttttctttttaagttcaacggttaatgcttcaattttagcccccataacagcaac |
13496696 |
T |
|
| Q |
447 |
ttttttcgaagaagctacatcggtagaaattgaaggcgatggtatcaaagat |
498 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
13496697 |
tttttctgaagaaactacatcggtagaaattgaaggcgatggtctcaaagat |
13496748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 30 - 141
Target Start/End: Original strand, 13496331 - 13496431
Alignment:
| Q |
30 |
aagttaggagaagggacaaagtacactcataaaaacaaaacatcaccacaaaatgtcaaaatattaaaggtaatcaaactaaagtttatcaccaatccac |
129 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
13496331 |
aagttaggagaagggacaaagtacattcataaaaacaaaacatcaccac-----------ataataaaggtaaccaaactaaagtttatcatcaatccac |
13496419 |
T |
|
| Q |
130 |
ctagtagttacc |
141 |
Q |
| |
|
||| |||||||| |
|
|
| T |
13496420 |
ctaatagttacc |
13496431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 246 - 326
Target Start/End: Original strand, 12820690 - 12820770
Alignment:
| Q |
246 |
gtaatcaagctaaaattcatctatctagttgttaccattatcaccctctccttcctgctgaattgaagtgttcatattagg |
326 |
Q |
| |
|
|||| ||| ||||| ||||||||||| ||||||||||||||||||||||| || ||| |||||||||| ||| ||| |||| |
|
|
| T |
12820690 |
gtaaccaaactaaagttcatctatctcgttgttaccattatcaccctctcttttctgttgaattgaagagtttataatagg |
12820770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 86 - 479
Target Start/End: Original strand, 10299880 - 10300277
Alignment:
| Q |
86 |
caaaatattaaaggtaatcaaactaaagtttatcaccaatccacctagtagttaccgagataagtttaccatctatccacttagtagttaccaacataaa |
185 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
10299880 |
caaaatattaaaggtaactaaactaaagtttatcatcaatccacctagtagttaccaagataagtttaccatcaatccacttagtagttacaaacataaa |
10299979 |
T |
|
| Q |
186 |
gttgtctaaaatataaaagaccatgatatgttttatctaacaaaatataccaaaataaaggtaatcaa----gctaaaattcatctatctagttgttacc |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| | || ||| |||||| ||||||||||||||||| ||| |
|
|
| T |
10299980 |
gttgtctaaaatataaaagaccatgatatgtttgatctaacaaaagataccaaaataaaagcaaccaattaagctaaagttcatctatctagttgtcacc |
10300079 |
T |
|
| Q |
282 |
attatcaccctctccttcctgctgaattgaagtgttcatattaggatcaatatacccaatcatttgctccaagcgctccgtcttctgttttagcgtttct |
381 |
Q |
| |
|
||||||||| ||||||||| || ||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10300080 |
attatcaccttctccttccggcataattgaagtgttcatattaggcacaatattcccaatcatttgctccaagcgctccatcttctgttttagcgtttct |
10300179 |
T |
|
| Q |
382 |
tgttcaagatttttcttttcaagttcagtgcttaatgcttcaattttagcctccatagcagcaacttttttcgaagaagctacatcggtagaaattga |
479 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||| ||| |||||||||||| ||||| || ||||||| |||||||||||||||||| |
|
|
| T |
10300180 |
tgttcaagatttttcttttcaagttcagcggttaatgcttcaatcttaacctccatagcagaaacttattaagaagaaggtacatcggtagaaattga |
10300277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 15 - 117
Target Start/End: Complemental strand, 28937051 - 28936949
Alignment:
| Q |
15 |
aatattttgatacccaagttaggagaagggacaaagtacactcataaaaacaaaacatcaccacaaaatgtcaaaatattaaaggtaatcaaactaaagt |
114 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
28937051 |
aatattttgatacccaaattaggagaagggacaaagtacactcatgaaaacaaaacatcaccacaaaatgtcaaaatattaaagataatcaaactaaagt |
28936952 |
T |
|
| Q |
115 |
tta |
117 |
Q |
| |
|
||| |
|
|
| T |
28936951 |
tta |
28936949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 142; Significance: 3e-74; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 170 - 487
Target Start/End: Complemental strand, 17031576 - 17031259
Alignment:
| Q |
170 |
tagttaccaacataaagttgtctaaaatataaaagaccatgatatgttttatctaacaaaatataccaaaataaaggtaatcaagctaaaattcatctat |
269 |
Q |
| |
|
|||||||||| ||||| |||| |||||||||||||| |||||||| ||| |||||| |||| |||| |||||||| | ||| |||||||| ||||||||| |
|
|
| T |
17031576 |
tagttaccaatataaatttgtgtaaaatataaaagatcatgatatctttgatctaataaaagatactaaaataaaagcaattaagctaaagttcatctat |
17031477 |
T |
|
| Q |
270 |
ctagttgttaccattatcaccctctccttcctgctgaattgaagtgttcatattaggatcaatatacccaatcatttgctccaagcgctccgtcttctgt |
369 |
Q |
| |
|
|| | ||| |||||||||||||||| |||| | |||||||||| ||||||| |||| | | || ||||| |||||||||||||||||| |||| ||| |
|
|
| T |
17031476 |
ctcatcgtttccattatcaccctctctttccggttgaattgaagagttcataataggtaccaaattcccaaacatttgctccaagcgctcaatcttttgt |
17031377 |
T |
|
| Q |
370 |
tttagcgtttcttgttcaagatttttcttttcaagttcagtgcttaatgcttcaattttagcctccatagcagcaacttttttcgaagaagctacatcgg |
469 |
Q |
| |
|
||||| |||||||||| |||||||||||||| ||||| || ||||||||||||| |||| ||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
17031376 |
tttagtgtttcttgttaaagatttttctttttaagtttagcaattaatgcttcaatcttagtgtccatagcagcaactttttctgaagaaactacatcgg |
17031277 |
T |
|
| Q |
470 |
tagaaattgaaggcgatg |
487 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
17031276 |
tagaaattgaaggcgatg |
17031259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 170 - 487
Target Start/End: Complemental strand, 17562012 - 17561695
Alignment:
| Q |
170 |
tagttaccaacataaagttgtctaaaatataaaagaccatgatatgttttatctaacaaaatataccaaaataaaggtaatcaagctaaaattcatctat |
269 |
Q |
| |
|
|||||||||| ||||| |||| |||||||||||||| |||||||| ||| |||||| |||| |||| |||||||| | ||| |||||||| ||||||||| |
|
|
| T |
17562012 |
tagttaccaatataaatttgtgtaaaatataaaagatcatgatatctttgatctaataaaagatactaaaataaaagcaattaagctaaagttcatctat |
17561913 |
T |
|
| Q |
270 |
ctagttgttaccattatcaccctctccttcctgctgaattgaagtgttcatattaggatcaatatacccaatcatttgctccaagcgctccgtcttctgt |
369 |
Q |
| |
|
|| | ||| |||||||||||||||| |||| | |||||||||| ||||||| |||| | | || ||||| |||||||||||||||||| |||| ||| |
|
|
| T |
17561912 |
ctcatcgtttccattatcaccctctctttccggttgaattgaagagttcataataggtaccaaattcccaaacatttgctccaagcgctcaatcttttgt |
17561813 |
T |
|
| Q |
370 |
tttagcgtttcttgttcaagatttttcttttcaagttcagtgcttaatgcttcaattttagcctccatagcagcaacttttttcgaagaagctacatcgg |
469 |
Q |
| |
|
||||| |||||||||| |||||||||||||| ||||| || ||||||||||||| |||| ||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
17561812 |
tttagtgtttcttgttaaagatttttctttttaagtttagcaattaatgcttcaatcttagtgtccatagcagcaactttttctgaagaaactacatcgg |
17561713 |
T |
|
| Q |
470 |
tagaaattgaaggcgatg |
487 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
17561712 |
tagaaattgaaggcgatg |
17561695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 147 - 383
Target Start/End: Original strand, 17561430 - 17561666
Alignment:
| Q |
147 |
aagtttaccatctatccacttagtagttaccaacataaagttgtctaaaatataaaagaccatgatatgttttatctaacaaaatataccaaaataaagg |
246 |
Q |
| |
|
||||||| |||| |||||| |||||||| |||| ||||||||||||||||||||||||| ||||| | ||| ||||||||||| | || |||||||| | |
|
|
| T |
17561430 |
aagtttatcatcaatccacctagtagttgccaatataaagttgtctaaaatataaaagatcatgacgtctttgatctaacaaaagacacaaaaataaaag |
17561529 |
T |
|
| Q |
247 |
taatcaagctaaaattcatctatctagttgttaccattatcaccctctccttcctgctgaattgaagtgttcatattaggatcaatatacccaatcattt |
346 |
Q |
| |
|
|| ||||||||| ||| ||||||| | ||| |||||||||| |||||||||| | ||||||||| ||| || | || ||| || || || ||||| |
|
|
| T |
17561530 |
caaccaagctaaagttcttctatctcatcgtttccattatcactctctccttccggttgaattgaaaagtttgtaattggtacaaaattccaaaacattt |
17561629 |
T |
|
| Q |
347 |
gctccaagcgctccgtcttctgttttagcgtttcttg |
383 |
Q |
| |
|
|| ||||||||||| |||| ||||||||||||||||| |
|
|
| T |
17561630 |
gccccaagcgctccatcttttgttttagcgtttcttg |
17561666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 147 - 383
Target Start/End: Original strand, 17030994 - 17031230
Alignment:
| Q |
147 |
aagtttaccatctatccacttagtagttaccaacataaagttgtctaaaatataaaagaccatgatatgttttatctaacaaaatataccaaaataaagg |
246 |
Q |
| |
|
||||||| |||| |||||| |||||||| |||| ||||||||||||||||||||||||| ||||| | ||| ||||||||| | | || |||||||| | |
|
|
| T |
17030994 |
aagtttatcatcaatccacctagtagttgccaatataaagttgtctaaaatataaaagatcatgacgtctttgatctaacaanagacacaaaaataaaag |
17031093 |
T |
|
| Q |
247 |
taatcaagctaaaattcatctatctagttgttaccattatcaccctctccttcctgctgaattgaagtgttcatattaggatcaatatacccaatcattt |
346 |
Q |
| |
|
|| ||||||||| ||| ||||||| | ||| |||||||| | |||||||||| | ||||||||| ||| || | || ||| || || || ||||| |
|
|
| T |
17031094 |
caaccaagctaaagttcttctatctcatcgtttccattatcnctctctccttccggttgaattgaaaagtttgtaattggtacaaaattccaaaacattt |
17031193 |
T |
|
| Q |
347 |
gctccaagcgctccgtcttctgttttagcgtttcttg |
383 |
Q |
| |
|
|| ||||||||||| |||| ||||||||||||||||| |
|
|
| T |
17031194 |
gccccaagcgctccatcttttgttttagcgtttcttg |
17031230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 238 - 451
Target Start/End: Complemental strand, 27830530 - 27830317
Alignment:
| Q |
238 |
aaataaaggtaatcaagctaaaattcatctatctagttgttaccattatcaccctctccttcctgctgaattgaagtgttcatattaggatcaatatacc |
337 |
Q |
| |
|
||||||| ||| ||| ||||| ||||||||||| || ||||| ||||||||||||||||||| |||||||||| |||||| | ||| || || |
|
|
| T |
27830530 |
aaataaaattaaccaaactaaatttcatctatctcgtcgttactattatcaccctctccttccgcttgaattgaaga---catattggacacaaaattcc |
27830434 |
T |
|
| Q |
338 |
caatcatttgctccaagcgctccgtcttctgttttagcgtttcttgttcaagatttttcttttcaagttca---gtgcttaatgcttcaattttagcctc |
434 |
Q |
| |
|
||| |||||| | |||| ||||| |||||||||||| | ||||||||||| ||||||||||||||||||| | |||| |||||| | |||||||| |
|
|
| T |
27830433 |
caaacatttggttcaagtgctccatcttctgttttatcatttcttgttcacaatttttcttttcaagttcatccattattaaggcttcattcttagcctc |
27830334 |
T |
|
| Q |
435 |
catagcagcaacttttt |
451 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
27830333 |
cataggagcaacttttt |
27830317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 47 - 138
Target Start/End: Original strand, 17561367 - 17561457
Alignment:
| Q |
47 |
aaagtacactcataaaaacaaaacatcaccacaaaatgtcaaaatattaaaggtaatcaaactaaagtttatcaccaatccacctagtagtt |
138 |
Q |
| |
|
||||| || ||||||||||||||||||| || ||| ||||||||| |||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
17561367 |
aaagtccattcataaaaacaaaacatcagcatgtaatatcaaaatat-aaaggtaactaaactaaagtttatcatcaatccacctagtagtt |
17561457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 47 - 138
Target Start/End: Original strand, 17030931 - 17031021
Alignment:
| Q |
47 |
aaagtacactcataaaaacaaaacatcaccacaaaatgtcaaaatattaaaggtaatcaaactaaagtttatcaccaatccacctagtagtt |
138 |
Q |
| |
|
||||| || ||||||||||||||||||| || ||| ||||||||| |||||||| || ||||||||||||| ||||||||||||||||| |
|
|
| T |
17030931 |
aaagtccattcataaaaacaaaacatcagcatgtaatatcaaaatat-aaaggtaactaanctaaagtttatcatcaatccacctagtagtt |
17031021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 246 - 326
Target Start/End: Complemental strand, 19946554 - 19946474
Alignment:
| Q |
246 |
gtaatcaagctaaaattcatctatctagttgttaccattatcaccctctccttcctgctgaattgaagtgttcatattagg |
326 |
Q |
| |
|
|||| ||| ||||| |||||| |||| | |||||||||||||||||||||||||||| |||||||||| ||| ||| |||| |
|
|
| T |
19946554 |
gtaaccaaactaaagttcatccatctcgctgttaccattatcaccctctccttcctgttgaattgaagagtttataatagg |
19946474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 132
Target Start/End: Complemental strand, 17031627 - 17031581
Alignment:
| Q |
85 |
tcaaaatattaaaggtaatcaaactaaagtttatcaccaatccaccta |
132 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
17031627 |
tcaaaatat-aaaggtaaccaaactaaagtttatcatcaatccaccta |
17031581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 132
Target Start/End: Complemental strand, 17562063 - 17562017
Alignment:
| Q |
85 |
tcaaaatattaaaggtaatcaaactaaagtttatcaccaatccaccta |
132 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
17562063 |
tcaaaatat-aaaggtaaccaaactaaagtttatcatcaatccaccta |
17562017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 129; Significance: 2e-66; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 167 - 447
Target Start/End: Complemental strand, 3331183 - 3330904
Alignment:
| Q |
167 |
tagtagttaccaacataaagttgtctaaaatataaaagaccatgatatgttttatctaacaaaatataccaaaataaaggtaatcaagctaaaattcatc |
266 |
Q |
| |
|
|||| ||||||| |||||||| |||||||| ||||||| |||||||||||| ||||||||||| ||| |||||||||||||| ||||||||| ||||| |
|
|
| T |
3331183 |
tagttgttaccagtataaagttatctaaaatttaaaagatcatgatatgtttgatctaacaaaagatatcaaaataaaggtaaccaagctaaagatcatc |
3331084 |
T |
|
| Q |
267 |
tatctagttgttaccattatcaccctctccttcctgctgaattgaagtgttcatattaggatcaatatacccaatcatttgctccaagcgctccgtcttc |
366 |
Q |
| |
|
||||| || |||||||||||||||||||||||| | |||||||| | |||||||||||| ||| || || || ||||||||||||| | || ||||| |
|
|
| T |
3331083 |
tatctcgtcgttaccattatcaccctctccttcaggttgaattgatgagttcatattaggcacaagattcctaagtatttgctccaagcac-ccatcttc |
3330985 |
T |
|
| Q |
367 |
tgttttagcgtttcttgttcaagatttttcttttcaagttcagtgcttaatgcttcaattttagcctccatagcagcaact |
447 |
Q |
| |
|
| ||||| |||||||||||| ||||||||||||||||||||| | ||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
3330984 |
tcttttattgtttcttgttcacgatttttcttttcaagttcagcggttaatgcttcaatcttagcctccatagcaacaact |
3330904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 211 - 326
Target Start/End: Original strand, 10077884 - 10077999
Alignment:
| Q |
211 |
atatgttttatctaacaaaatataccaaaataaaggtaatcaagctaaaattcatctatctagttgttaccattatcaccctctccttcctgctgaattg |
310 |
Q |
| |
|
|||||||| ||||||||||| ||| ||| ||| |||| ||| ||||| |||||| | || || ||||||||||||||||||||||||||| || |||| |
|
|
| T |
10077884 |
atatgtttgatctaacaaaaaatatataaacaaatgtaaccaaactaaagttcatccagctcgtcgttaccattatcaccctctccttcctgttgcattg |
10077983 |
T |
|
| Q |
311 |
aagtgttcatattagg |
326 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
10077984 |
aagagttcatattagg |
10077999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0860 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold0860
Description:
Target: scaffold0860; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 86 - 230
Target Start/End: Original strand, 1648 - 1792
Alignment:
| Q |
86 |
caaaatattaaaggtaatcaaactaaagtttatcaccaatccacctagtagttaccgagataagtttaccatctatccacttagtagttaccaacataaa |
185 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
1648 |
caaaatattaaaggtaactaaactaaagtttatcatcaatccacctagtagttaccaagataagtttaccatcaatccacttagtagttactaacataaa |
1747 |
T |
|
| Q |
186 |
gttgtctaaaatataaaagaccatgatatgttttatctaacaaaa |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1748 |
gttgtctaaaatataaaagaccatgatatgtttgatctaacaaaa |
1792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 9e-22; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 352 - 409
Target Start/End: Complemental strand, 21844209 - 21844152
Alignment:
| Q |
352 |
aagcgctccgtcttctgttttagcgtttcttgttcaagatttttcttttcaagttcag |
409 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21844209 |
aagcgctccatcttctgttttagcgtttcttgttcaagatttttcttttcaagttcag |
21844152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 237 - 325
Target Start/End: Original strand, 38962370 - 38962458
Alignment:
| Q |
237 |
aaaataaaggtaatcaagctaaaattcatctatctagttgttaccattatcaccctctccttcctgctgaattgaagtgttcatattag |
325 |
Q |
| |
|
|||||||||||||||||| |||| |||||| |||| | |||||| ||||| | |||||||||| | |||||||||| ||||||||||| |
|
|
| T |
38962370 |
aaaataaaggtaatcaagttaaagttcatccatctcgccgttacctttatccctctctccttccggttgaattgaagagttcatattag |
38962458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 450
Target Start/End: Original strand, 38962500 - 38962595
Alignment:
| Q |
355 |
cgctccgtcttctgttttagcgtttcttgttcaagatttttcttttcaagttcagtgcttaatgcttcaattttagcctccatagcagcaactttt |
450 |
Q |
| |
|
|||||| |||||||||||| | || || |||| |||||||||| |||| |||| ||||||||| ||| |||||||||||| ||||||||||| |
|
|
| T |
38962500 |
cgctccatcttctgttttatcattatttattcaggatttttcttctcaacttcaacagttaatgctttaatcttagcctccataccagcaactttt |
38962595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University