View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19753_low_4 (Length: 333)

Name: NF19753_low_4
Description: NF19753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19753_low_4
NF19753_low_4
[»] scaffold0097 (1 HSPs)
scaffold0097 (14-318)||(37827-38129)
[»] chr4 (17 HSPs)
chr4 (130-217)||(54235228-54235315)
chr4 (124-203)||(5024679-5024758)
chr4 (130-198)||(5496857-5496925)
chr4 (149-234)||(12276821-12276905)
chr4 (125-208)||(4423175-4423258)
chr4 (161-217)||(3249702-3249758)
chr4 (150-209)||(36494440-36494499)
chr4 (166-244)||(54010025-54010102)
chr4 (152-217)||(4479604-4479669)
chr4 (187-246)||(2734168-2734226)
chr4 (165-244)||(55762905-55762983)
chr4 (152-217)||(24788653-24788718)
chr4 (152-217)||(24819542-24819607)
chr4 (113-217)||(24980614-24980718)
chr4 (150-209)||(3079637-3079696)
chr4 (187-217)||(48514598-48514628)
chr4 (148-206)||(54722239-54722296)
[»] chr5 (30 HSPs)
chr5 (149-217)||(42324905-42324973)
chr5 (114-217)||(34252734-34252837)
chr5 (128-198)||(9530949-9531019)
chr5 (129-208)||(20219522-20219600)
chr5 (130-217)||(9956504-9956591)
chr5 (141-208)||(30293402-30293469)
chr5 (115-217)||(39030580-39030682)
chr5 (122-217)||(15119314-15119409)
chr5 (149-208)||(28023948-28024007)
chr5 (115-217)||(968273-968375)
chr5 (130-216)||(20185319-20185404)
chr5 (122-203)||(14646360-14646441)
chr5 (152-204)||(6021971-6022023)
chr5 (114-230)||(26730044-26730159)
chr5 (121-217)||(39030560-39030656)
chr5 (121-208)||(19644396-19644482)
chr5 (130-217)||(33669933-33670020)
chr5 (126-217)||(36058776-36058867)
chr5 (168-239)||(42708578-42708648)
chr5 (115-217)||(2424429-2424531)
chr5 (160-206)||(38958089-38958135)
chr5 (115-203)||(25467097-25467185)
chr5 (160-215)||(2660270-2660325)
chr5 (114-217)||(39015018-39015121)
chr5 (157-208)||(39290817-39290868)
chr5 (150-192)||(12619661-12619703)
chr5 (155-217)||(16500574-16500636)
chr5 (141-203)||(17555961-17556023)
chr5 (175-208)||(14325900-14325933)
chr5 (173-233)||(11600717-11600777)
[»] chr3 (14 HSPs)
chr3 (122-217)||(32221468-32221563)
chr3 (155-208)||(22756905-22756958)
chr3 (121-217)||(26104235-26104331)
chr3 (163-217)||(40905819-40905873)
chr3 (126-206)||(46733045-46733125)
chr3 (121-217)||(47783095-47783191)
chr3 (114-217)||(26914440-26914542)
chr3 (150-217)||(31280172-31280239)
chr3 (122-215)||(29637431-29637524)
chr3 (150-218)||(8155389-8155457)
chr3 (123-203)||(15282638-15282718)
chr3 (130-218)||(45610450-45610538)
chr3 (185-234)||(46829103-46829151)
chr3 (163-203)||(26439347-26439387)
[»] chr2 (35 HSPs)
chr2 (130-217)||(41374535-41374622)
chr2 (115-209)||(16180426-16180520)
chr2 (128-217)||(43398842-43398931)
chr2 (114-244)||(38935353-38935482)
chr2 (140-244)||(2884247-2884350)
chr2 (149-217)||(4225002-4225070)
chr2 (141-217)||(7932760-7932836)
chr2 (122-201)||(24037582-24037661)
chr2 (114-208)||(944797-944891)
chr2 (111-217)||(4445851-4445957)
chr2 (115-217)||(10459283-10459385)
chr2 (122-241)||(16564372-16564488)
chr2 (160-217)||(19924321-19924378)
chr2 (115-208)||(43042192-43042285)
chr2 (149-218)||(43465474-43465543)
chr2 (155-227)||(4592447-4592518)
chr2 (164-244)||(17437166-17437245)
chr2 (130-218)||(35311191-35311278)
chr2 (163-217)||(31469088-31469142)
chr2 (150-234)||(11386308-11386393)
chr2 (121-217)||(29291061-29291157)
chr2 (121-217)||(31469068-31469164)
chr2 (140-194)||(1862671-1862725)
chr2 (160-206)||(15244021-15244067)
chr2 (147-209)||(15258824-15258886)
chr2 (147-209)||(36089478-36089540)
chr2 (176-209)||(5388842-5388875)
chr2 (121-246)||(24037573-24037697)
chr2 (115-184)||(41099028-41099097)
chr2 (157-218)||(44726815-44726876)
chr2 (149-217)||(2949059-2949127)
chr2 (147-215)||(14166712-14166780)
chr2 (176-244)||(15660703-15660770)
chr2 (150-198)||(36597121-36597169)
chr2 (147-195)||(40823552-40823600)
[»] scaffold0067 (1 HSPs)
scaffold0067 (125-217)||(35957-36049)
[»] chr8 (13 HSPs)
chr8 (114-217)||(29110949-29111052)
chr8 (155-218)||(15114633-15114696)
chr8 (122-229)||(37627908-37628013)
chr8 (163-245)||(8777759-8777840)
chr8 (114-244)||(9548040-9548168)
chr8 (130-215)||(29797946-29798034)
chr8 (116-217)||(7974778-7974879)
chr8 (149-217)||(13209981-13210049)
chr8 (130-234)||(35901041-35901144)
chr8 (141-217)||(28725603-28725678)
chr8 (115-242)||(33557766-33557892)
chr8 (150-208)||(11114262-11114320)
chr8 (160-208)||(11196253-11196301)
[»] chr7 (15 HSPs)
chr7 (130-217)||(44816484-44816571)
chr7 (124-217)||(18731990-18732083)
chr7 (122-209)||(6803332-6803419)
chr7 (130-215)||(32652412-32652497)
chr7 (150-217)||(16866427-16866494)
chr7 (150-217)||(23971211-23971278)
chr7 (166-217)||(27147614-27147665)
chr7 (122-205)||(30483889-30483972)
chr7 (150-209)||(30794466-30794525)
chr7 (142-206)||(4259324-4259387)
chr7 (155-238)||(5026137-5026219)
chr7 (141-203)||(14773502-14773564)
chr7 (141-203)||(15223954-15224016)
chr7 (175-209)||(47186898-47186932)
chr7 (114-219)||(47967903-47968008)
[»] scaffold0027 (1 HSPs)
scaffold0027 (124-208)||(13200-13284)
[»] chr1 (18 HSPs)
chr1 (124-216)||(37918914-37919006)
chr1 (130-215)||(3693993-3694078)
chr1 (156-216)||(30295940-30296000)
chr1 (160-244)||(47543590-47543673)
chr1 (130-217)||(30693352-30693439)
chr1 (147-237)||(5056317-5056406)
chr1 (163-234)||(3739853-3739923)
chr1 (149-208)||(9238229-9238288)
chr1 (122-217)||(19758268-19758364)
chr1 (176-244)||(24023976-24024043)
chr1 (157-209)||(33678969-33679021)
chr1 (142-217)||(35310271-35310345)
chr1 (130-196)||(27527711-27527777)
chr1 (121-246)||(3739803-3739927)
chr1 (125-205)||(24922406-24922485)
chr1 (155-189)||(38067164-38067198)
chr1 (163-216)||(29855076-29855129)
chr1 (130-198)||(26265785-26265853)
[»] chr6 (20 HSPs)
chr6 (112-239)||(35003755-35003881)
chr6 (115-209)||(30531203-30531297)
chr6 (115-217)||(31323831-31323933)
chr6 (130-216)||(31522614-31522700)
chr6 (148-217)||(9829908-9829977)
chr6 (111-219)||(2282413-2282521)
chr6 (157-216)||(28004656-28004715)
chr6 (163-217)||(8437813-8437867)
chr6 (113-234)||(1986205-1986325)
chr6 (112-209)||(14446721-14446818)
chr6 (128-215)||(1937664-1937751)
chr6 (130-217)||(30531184-30531271)
chr6 (130-194)||(14222833-14222897)
chr6 (130-217)||(13422149-13422236)
chr6 (115-201)||(9675753-9675839)
chr6 (154-208)||(24640120-24640174)
chr6 (148-206)||(29004192-29004250)
chr6 (152-206)||(33822316-33822370)
chr6 (160-217)||(18325382-18325439)
chr6 (148-197)||(24547196-24547245)
[»] scaffold2113 (1 HSPs)
scaffold2113 (166-216)||(618-668)
[»] scaffold0009 (1 HSPs)
scaffold0009 (149-203)||(51246-51300)
[»] scaffold0650 (1 HSPs)
scaffold0650 (160-210)||(19-69)
[»] scaffold0236 (1 HSPs)
scaffold0236 (163-217)||(14551-14605)
[»] scaffold0034 (1 HSPs)
scaffold0034 (122-208)||(94972-95058)
[»] scaffold0230 (1 HSPs)
scaffold0230 (160-217)||(18916-18973)
[»] scaffold0003 (1 HSPs)
scaffold0003 (157-209)||(312753-312805)


Alignment Details
Target: scaffold0097 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 14 - 318
Target Start/End: Complemental strand, 38129 - 37827
Alignment:
Q  14 ttctcttgattatcactgtcatgtccattgccaagcttcttaagcctaatcgcattaaccatgctcccagtccttgatatgattaacatatatacactat 113  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  38129 ttctcttgattatcactgtcatgtccatttccaagcttctcaagcctaatcgcattaaccatgctcccagtccttgatatgattaacatatatacaccgt 38030  T
Q  114 atactctctccgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaat 213  Q
    |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  38029 a--ctctctccgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttaaaccaaatacattaacttttgttgactaat 37932  T
Q  214 tttttgtctatattttaggacagaaggagtacactattagacatatatacgaatatgttgttttttctatgttgactttcttctgtttgagtgttagtgt 313  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37931 tttttatctatattttaggacagagggagtacactattagacatatatacgaatatgttgttttttctatgttgactttcttctgtttgagtgttagtgt 37832  T
Q  314 ttgat 318  Q
    |||||    
T  37831 ttgat 37827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 130 - 217
Target Start/End: Original strand, 54235228 - 54235315
Alignment:
Q  130 aaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttt 217  Q
    ||||||||| |||||| |||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||  |||||||    
T  54235228 aaaatgtaagcaaaaatgagtcaatataaattgatgtatttagtacaaattttgaaccaaatacattaacttttgttgagcaattttt 54235315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 124 - 203
Target Start/End: Complemental strand, 5024758 - 5024679
Alignment:
Q  124 cgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaactttt 203  Q
    |||||||||||||||  ||||| |||||||||||||||| |||||||| |||||||||||||  ||||||||||||||||    
T  5024758 cgtcctaaaatgtaattaaaaatgagtcaatataaattgttgtatttgatataaattttgaaataaatacattaactttt 5024679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 5496857 - 5496925
Alignment:
Q  130 aaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaa 198  Q
    |||||||||||||||| |||||||||||| ||||| ||||||||| |||||||||| ||||||||||||    
T  5496857 aaaatgtaaacaaaaatgagtcaatataagttgatttatttggtacaaattttgaaccaaatacattaa 5496925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 149 - 234
Target Start/End: Complemental strand, 12276905 - 12276821
Alignment:
Q  149 gtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttttgtctatattttaggac 234  Q
    ||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||| |||| ||| |||  | |||||||||||||    
T  12276905 gtcaacataagttgatgtatttagtataaattttgaatcaaatacattaacttttgctgaccaatctttact-tatattttaggac 12276821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 125 - 208
Target Start/End: Complemental strand, 4423258 - 4423175
Alignment:
Q  125 gtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttga 208  Q
    |||| ||||||||| |||||| |  ||||||||| ||||||||||||||| ||||||||||||||||| ||||| |||| ||||    
T  4423258 gtcccaaaatgtaagcaaaaatggatcaatataagttgatgtatttggtacaaattttgaatcaaatatattaatttttattga 4423175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 161 - 217
Target Start/End: Complemental strand, 3249758 - 3249702
Alignment:
Q  161 tgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttt 217  Q
    |||||||| |||||||||||||||| ||||||||||||||||||| ||| |||||||    
T  3249758 tgatgtatctggtataaattttgaaccaaatacattaacttttgtcgaccaattttt 3249702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 209
Target Start/End: Complemental strand, 36494499 - 36494440
Alignment:
Q  150 tcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgac 209  Q
    |||||||||||||||| ||||  |||||||| |||||||||||||||||||||| |||||    
T  36494499 tcaatataaattgatgcatttaatataaattatgaatcaaatacattaacttttcttgac 36494440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 166 - 244
Target Start/End: Original strand, 54010025 - 54010102
Alignment:
Q  166 tatttggtataaattttgaatcaaatacattaacttttgttgactaattttttgtctatattttaggacagaaggagta 244  Q
    ||||||||||||||||||||||||||||||||| ||||||| | ||| ||||||  |||||| | |||||||| |||||    
T  54010025 tatttggtataaattttgaatcaaatacattaagttttgttta-taaatttttgcttatattgtgggacagaaagagta 54010102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 217
Target Start/End: Original strand, 4479604 - 4479669
Alignment:
Q  152 aatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttt 217  Q
    ||||||| || |||||| ||||||||||||||||||||||| ||||| |||||||||  |||||||    
T  4479604 aatataagttaatgtatctggtataaattttgaatcaaatatattaatttttgttgatcaattttt 4479669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 246
Target Start/End: Complemental strand, 2734226 - 2734168
Alignment:
Q  187 caaatacattaacttttgttgactaattttttgtctatattttaggacagaaggagtaca 246  Q
    |||||||||||||||||||||||||||||||  | |||||||| |||| |||||||||||    
T  2734226 caaatacattaacttttgttgactaatttttact-tatattttgggacggaaggagtaca 2734168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 244
Target Start/End: Original strand, 55762905 - 55762983
Alignment:
Q  165 gtatttggtataaattttgaatcaaatacattaacttttgttgactaattttttgtctatattttaggacagaaggagta 244  Q
    ||||||| || ||||||| ||||||||| |||||||||||||||| || ||||||| |||||||| |||| || ||||||    
T  55762905 gtatttgctacaaatttttaatcaaatatattaacttttgttgaccaa-tttttgtttatattttgggacggagggagta 55762983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 152 - 217
Target Start/End: Complemental strand, 24788718 - 24788653
Alignment:
Q  152 aatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttt 217  Q
    ||||||| |||||||||||| || ||||||  ||| ||||||||||| ||||||||| ||||||||    
T  24788718 aatataagttgatgtatttgatacaaatttcaaattaaatacattaatttttgttgattaattttt 24788653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 152 - 217
Target Start/End: Original strand, 24819542 - 24819607
Alignment:
Q  152 aatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttt 217  Q
    ||||||| |||||||||||| || ||||||  ||| ||||||||||| ||||||||| ||||||||    
T  24819542 aatataagttgatgtatttgatacaaatttcaaattaaatacattaatttttgttgattaattttt 24819607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 217
Target Start/End: Original strand, 24980614 - 24980718
Alignment:
Q  113 tatactctctccgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaa 212  Q
    ||||||| |||||| |||||||||||  ||||| |  |||| |||| ||||||||| ||  | |||||||| |  ||||||||||| |||||||||| ||    
T  24980614 tatactccctccgttctaaaatgtaagtaaaaatggatcaacataagttgatgtatctgacacaaattttgtacaaaatacattaatttttgttgacaaa 24980713  T
Q  213 ttttt 217  Q
    |||||    
T  24980714 ttttt 24980718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 209
Target Start/End: Original strand, 3079637 - 3079696
Alignment:
Q  150 tcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgac 209  Q
    |||||| |||||||||||||| || |||||||||||| || ||||| || ||||||||||    
T  3079637 tcaataaaaattgatgtattttgtctaaattttgaataaagtacatcaatttttgttgac 3079696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 217
Target Start/End: Original strand, 48514598 - 48514628
Alignment:
Q  187 caaatacattaacttttgttgactaattttt 217  Q
    |||||||||||||||||||||||||||||||    
T  48514598 caaatacattaacttttgttgactaattttt 48514628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 206
Target Start/End: Original strand, 54722239 - 54722296
Alignment:
Q  148 agtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgtt 206  Q
    |||||| |||||||||| |||| | |||||||||||| | |||||||||||||||||||    
T  54722239 agtcaaaataaattgatatattcg-tataaattttgagttaaatacattaacttttgtt 54722296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 9e-24; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 149 - 217
Target Start/End: Original strand, 42324905 - 42324973
Alignment:
Q  149 gtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttt 217  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||    
T  42324905 gtcaatataaattgatgtatttggtataaattttaaaacaaatacattaacttttgttgaccaattttt 42324973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 114 - 217
Target Start/End: Complemental strand, 34252837 - 34252734
Alignment:
Q  114 atactctctccgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaat 213  Q
    |||||| |||||||| ||||||||| |||||| | || || |||| |||||| || ||| |||||||||||| ||||||||||||||||||||||| |||    
T  34252837 atactccctccgtcccaaaatgtaagcaaaaatgggttaacataagttgatgaatgtggcataaattttgaaccaaatacattaacttttgttgaccaat 34252738  T
Q  214 tttt 217  Q
    ||||    
T  34252737 tttt 34252734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 128 - 198
Target Start/End: Complemental strand, 9531019 - 9530949
Alignment:
Q  128 ctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaa 198  Q
    ||||||||||| |||||| |||||||||||||||| |||||||| ||||||||||||| ||||||||||||    
T  9531019 ctaaaatgtaagcaaaaatgagtcaatataaattggtgtatttgatataaattttgaaccaaatacattaa 9530949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 129 - 208
Target Start/End: Complemental strand, 20219600 - 20219522
Alignment:
Q  129 taaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttga 208  Q
    ||||||||||||||||| | || ||||||| ||||| ||||||| ||||||||||||||||||| |||||||||||||||    
T  20219600 taaaatgtaaacaaaaaag-gttaatataagttgatatatttggcataaattttgaatcaaatatattaacttttgttga 20219522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 130 - 217
Target Start/End: Original strand, 9956504 - 9956591
Alignment:
Q  130 aaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttt 217  Q
    |||||||||  ||||| | ||||| |||  ||||||||| || |||||||||||||||||||||||||||||||||| || |||||||    
T  9956504 aaaatgtaagtaaaaatgggtcaacatatgttgatgtatctgttataaattttgaatcaaatacattaacttttgttaaccaattttt 9956591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 141 - 208
Target Start/End: Complemental strand, 30293469 - 30293402
Alignment:
Q  141 aaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttga 208  Q
    ||||| ||||||| |||  |||||||||||| |||||||||||||||||||||||| |||||||||||    
T  30293469 aaaaatgagtcaacatatgttgatgtatttgatataaattttgaatcaaatacattgacttttgttga 30293402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 217
Target Start/End: Complemental strand, 39030682 - 39030580
Alignment:
Q  115 tactctctccgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaatt 214  Q
    ||||| |||| ||| ||||| ||| ||||||  |||||| | || || |||||||||||| ||||||| || ||||||||||||||||||||||| ||||    
T  39030682 tactccctccatcccaaaatataagcaaaaattagtcaacaaaagttaatgtatttggtacaaatttttaaccaaatacattaacttttgttgaccaatt 39030583  T
Q  215 ttt 217  Q
    |||    
T  39030582 ttt 39030580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 217
Target Start/End: Complemental strand, 15119409 - 15119314
Alignment:
Q  122 tccgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttt 217  Q
    ||||| ||||||| ||||||||||   || ||||||| || || |||||  || ||||||||||||||||||||||| |||| |||||||||||||    
T  15119409 tccgttctaaaatataaacaaaaattggttaatataagttaatatatttaatacaaattttgaatcaaatacattaagttttattgactaattttt 15119314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 28023948 - 28024007
Alignment:
Q  149 gtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttga 208  Q
    |||||||||| || |||||||| ||| |||||||||||||||||||||||||||| ||||    
T  28023948 gtcaatataagttaatgtattttgtacaaattttgaatcaaatacattaacttttattga 28024007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 115 - 217
Target Start/End: Original strand, 968273 - 968375
Alignment:
Q  115 tactctctccgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaatt 214  Q
    ||||||||||||   |||||||||  ||||  | |||||| ||| ||||||||||||||| ||||||||||  ||||| ||||| ||||||||||| |||    
T  968273 tactctctccgtttcaaaatgtaagtaaaagtgggtcaatttaagttgatgtatttggtacaaattttgaactaaatatattaatttttgttgactcatt 968372  T
Q  215 ttt 217  Q
    |||    
T  968373 ttt 968375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 130 - 216
Target Start/End: Original strand, 20185319 - 20185404
Alignment:
Q  130 aaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaatttt 216  Q
    |||||||||| ||||| |||| ||||||| | ||||||||| ||| |||||||||| |||||||||||| ||||||| || ||||||    
T  20185319 aaaatgtaaataaaaatgagttaatataagtcgatgtattttgtacaaattttgaaccaaatacattaa-ttttgttaaccaatttt 20185404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 203
Target Start/End: Original strand, 14646360 - 14646441
Alignment:
Q  122 tccgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaactttt 203  Q
    ||||| ||||||| |||  |||||  |||||||||||||| |||||||| ||| ||||||||||||| ||||||||| ||||    
T  14646360 tccgttctaaaatataagtaaaaataagtcaatataaattaatgtatttagtacaaattttgaatcatatacattaattttt 14646441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 6021971 - 6022023
Alignment:
Q  152 aatataaattgatgtatttggtataaattttgaatcaaatacattaacttttg 204  Q
    |||||||||| ||||||||| |||||||||| ||| |||||||||||||||||    
T  6021971 aatataaattaatgtatttgatataaattttaaattaaatacattaacttttg 6022023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 114 - 230
Target Start/End: Original strand, 26730044 - 26730159
Alignment:
Q  114 atactctctccgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaat 213  Q
    |||||| || |||||||| || ||| ||||||   | ||||||||  ||||| ||||| || ||||||| ||||||||||||||||||||||| || ||     
T  26730044 atactcccttcgtcctaagatataagcaaaaatatgacaatataagctgatggatttgatacaaatttttaatcaaatacattaacttttgttaaccaa- 26730142  T
Q  214 tttttgtctatatttta 230  Q
    ||||| |||||||||||    
T  26730143 tttttatctatatttta 26730159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 121 - 217
Target Start/End: Original strand, 39030560 - 39030656
Alignment:
Q  121 ctccgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttt 217  Q
    |||||| ||||||| ||| ||||||   ||||| | || || |||||||||||  ||| |||| | |||||||||||||||||||||||||||||||    
T  39030560 ctccgttctaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaacttttgttgactaattttt 39030656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 208
Target Start/End: Original strand, 19644396 - 19644482
Alignment:
Q  121 ctccgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttga 208  Q
    |||||||||||||| ||||||||||  | | |  |||| ||||||||||| |||||||||||||| ||||||| |||| |||||||||    
T  19644396 ctccgtcctaaaatataaacaaaaataatttac-ataagttgatgtatttagtataaattttgaaccaaatacgttaatttttgttga 19644482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 217
Target Start/End: Original strand, 33669933 - 33670020
Alignment:
Q  130 aaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttt 217  Q
    ||||||||| |||||| | ||||| |||| ||  ||||| ||||| ||||||| || ||||||||||||||||| ||||| |||||||    
T  33669933 aaaatgtaagcaaaaatgggtcaacataagttagtgtatctggtacaaattttaaaccaaatacattaactttttttgaccaattttt 33670020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 217
Target Start/End: Complemental strand, 36058867 - 36058776
Alignment:
Q  126 tcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttt 217  Q
    ||||||||| ||| ||||||||  ||||||||||||||| |||||  || ||||||| ||||| ||||||||| |||  ||||| |||||||    
T  36058867 tcctaaaatataagcaaaaacggatcaatataaattgatatattttatacaaattttaaatcatatacattaattttaattgacaaattttt 36058776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 239
Target Start/End: Complemental strand, 42708648 - 42708578
Alignment:
Q  168 tttggtataaattttgaatcaaatacattaacttttgttgactaattttttgtctatattttaggacagaag 239  Q
    ||||||||||||||| ||  ||||||||||||||||||||| ||| ||||||  ||||||||||||| ||||    
T  42708648 tttggtataaattttcaactaaatacattaacttttgttgattaa-tttttgcgtatattttaggacggaag 42708578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 217
Target Start/End: Original strand, 2424429 - 2424531
Alignment:
Q  115 tactctctccgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaatt 214  Q
    ||||| |||||| ||||||| ||| ||||||   || || ||||  |||||||| ||||| |||||||||| ||||||||||||||||| | ||| ||||    
T  2424429 tactccctccgtgctaaaatataagcaaaaatttgttaacataagctgatgtatatggtacaaattttgaaccaaatacattaacttttatcgaccaatt 2424528  T
Q  215 ttt 217  Q
    |||    
T  2424529 ttt 2424531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 206
Target Start/End: Complemental strand, 38958135 - 38958089
Alignment:
Q  160 ttgatgtatttggtataaattttgaatcaaatacattaacttttgtt 206  Q
    ||||||||||||||| ||| |||||| ||||||||||||||||||||    
T  38958135 ttgatgtatttggtacaaaatttgaaccaaatacattaacttttgtt 38958089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 203
Target Start/End: Original strand, 25467097 - 25467185
Alignment:
Q  115 tactctctccgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaactttt 203  Q
    |||||||||||||  ||||||||| |||||| |  | || |||| |||||||||  | ||||||||||||| || ||||||||||||||    
T  25467097 tactctctccgtctcaaaatgtaagcaaaaatggattaacataagttgatgtatccgatataaattttgaaccacatacattaactttt 25467185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 2660325 - 2660270
Alignment:
Q  160 ttgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattt 215  Q
    ||||||||||| || || ||| | ||||||||| ||||||||||||||||||||||    
T  2660325 ttgatgtatttagtctacattataaatcaaatatattaacttttgttgactaattt 2660270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 114 - 217
Target Start/End: Complemental strand, 39015121 - 39015018
Alignment:
Q  114 atactctctccgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaat 213  Q
    |||||||||| ||||||||||||||  ||||| |  ||||| ||| ||||||| |  |||| ||  |||||| |||||| ||||| ||| ||||||||||    
T  39015121 atactctctcagtcctaaaatgtaagtaaaaatggatcaatgtaagttgatgtgtccggtacaaggtttgaaccaaatatattaattttagttgactaat 39015022  T
Q  214 tttt 217  Q
    ||||    
T  39015021 tttt 39015018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 208
Target Start/End: Original strand, 39290817 - 39290868
Alignment:
Q  157 aaattgatgtatttggtataaattttgaatcaaatacattaacttttgttga 208  Q
    ||||||||||||||||  |||||||| ||| | |||||||||||||||||||    
T  39290817 aaattgatgtatttggattaaatttttaattagatacattaacttttgttga 39290868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 192
Target Start/End: Complemental strand, 12619703 - 12619661
Alignment:
Q  150 tcaatataaattgatgtatttggtataaattttgaatcaaata 192  Q
    |||| |||| |||||||||||| ||||||||||||||||||||    
T  12619703 tcaacataagttgatgtatttgatataaattttgaatcaaata 12619661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 217
Target Start/End: Complemental strand, 16500636 - 16500574
Alignment:
Q  155 ataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttt 217  Q
    |||||||||||||| |||  ||||||||||| ||| |||||||| |||||||||  |||||||    
T  16500636 ataaattgatgtatctggattaaattttgaaccaattacattaatttttgttgaacaattttt 16500574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 17555961 - 17556023
Alignment:
Q  141 aaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaactttt 203  Q
    ||||| |||||||  ||| ||||| |||||| ||||||||||||| || ||||||||||||||    
T  17555961 aaaaatgagtcaacgtaagttgatatatttgatataaattttgaaccacatacattaactttt 17556023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 208
Target Start/End: Complemental strand, 14325933 - 14325900
Alignment:
Q  175 taaattttgaatcaaatacattaacttttgttga 208  Q
    |||||||||||||||||||||||| |||||||||    
T  14325933 taaattttgaatcaaatacattaatttttgttga 14325900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 233
Target Start/End: Original strand, 11600717 - 11600777
Alignment:
Q  173 tataaattttgaatcaaatacattaacttttgttgactaattttttgtctatattttagga 233  Q
    |||||||||||||||||||| ||||||||||  | | | | ||||||| ||||||||||||    
T  11600717 tataaattttgaatcaaatatattaactttttattaatcaatttttgtttatattttagga 11600777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 122 - 217
Target Start/End: Original strand, 32221468 - 32221563
Alignment:
Q  122 tccgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttt 217  Q
    ||||||| ||||||||| ||||||    |||  |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  32221468 tccgtcccaaaatgtaagcaaaaattgatcagcataaattgatgtatttggtacaaattttgaaccaaatacattaacttttgttgactaattttt 32221563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 22756905 - 22756958
Alignment:
Q  155 ataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttga 208  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  22756905 ataaatcgatgtatttggtataaattttgaatcaaatacgttaacttttgttga 22756958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 121 - 217
Target Start/End: Complemental strand, 26104331 - 26104235
Alignment:
Q  121 ctccgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttt 217  Q
    |||| ||||||||||||| |||||| ||||||| |||||||||| | |||| || ||||||||||  ||||||||||  ||||||| || |||||||    
T  26104331 ctccatcctaaaatgtaagcaaaaatgagtcaacataaattgatttgtttgatacaaattttgaactaaatacattagtttttgttaaccaattttt 26104235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 40905873 - 40905819
Alignment:
Q  163 atgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttt 217  Q
    |||||| |||||||||||||||| |||||| |||||||||||||||| |||||||    
T  40905873 atgtatctggtataaattttgaaccaaataaattaacttttgttgaccaattttt 40905819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 126 - 206
Target Start/End: Complemental strand, 46733125 - 46733045
Alignment:
Q  126 tcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgtt 206  Q
    ||||||||||||| ||||||  ||||||  |||  ||||| ||||| || ||||||||||||||||||||||| |||||||    
T  46733125 tcctaaaatgtaagcaaaaataagtcaacgtaagctgatgcatttgatacaaattttgaatcaaatacattaatttttgtt 46733045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 121 - 217
Target Start/End: Complemental strand, 47783191 - 47783095
Alignment:
Q  121 ctccgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttt 217  Q
    |||||| | ||||| ||| |||||| ||||||| ||||   ||||||| || || |||||||||| ||||||||||||||||| ||||| |||||||    
T  47783191 ctccgttccaaaatataagcaaaaatgagtcaacataagccgatgtatctgatacaaattttgaaccaaatacattaactttttttgaccaattttt 47783095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 114 - 217
Target Start/End: Original strand, 26914440 - 26914542
Alignment:
Q  114 atactctctccgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaat 213  Q
    |||||| ||| |||| ||||||||| |||||| | | |||  ||| ||||||||||| |||||||||||||| || ||||||||| |||||||||  |||    
T  26914440 atactcactctgtcccaaaatgtaagcaaaaatg-gacaacttaagttgatgtatttagtataaattttgaaccacatacattaatttttgttgatcaat 26914538  T
Q  214 tttt 217  Q
    ||||    
T  26914539 tttt 26914542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 217
Target Start/End: Complemental strand, 31280239 - 31280172
Alignment:
Q  150 tcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttt 217  Q
    |||| ||||||| |||||| ||||| |||||||||| |||||||||||| |||||||||  |||||||    
T  31280239 tcaacataaattaatgtatatggtacaaattttgaaccaaatacattaaattttgttgatcaattttt 31280172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 215
Target Start/End: Original strand, 29637431 - 29637524
Alignment:
Q  122 tccgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattt 215  Q
    |||||| ||||||||||  |||||  |||||| ||||||| || |||||| || |||||||||| |||||||  ||| || |||||||||||||    
T  29637431 tccgtcttaaaatgtaagaaaaaataagtcaacataaattaatatatttgatacaaattttgaaccaaatactgtaatttatgttgactaattt 29637524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 8155389 - 8155457
Alignment:
Q  150 tcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaatttttt 218  Q
    |||| ||||||| ||||||||||| |||| ||||| ||||||||||||||| |||| ||  ||||||||    
T  8155389 tcaacataaattaatgtatttggtctaaaatttgattcaaatacattaactcttgtcgataaatttttt 8155457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 203
Target Start/End: Original strand, 15282638 - 15282718
Alignment:
Q  123 ccgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaactttt 203  Q
    |||||| ||||| |||||||||| |  |||| |||| |||||| || || || ||||||| ||||||||||||||||||||    
T  15282638 ccgtcccaaaatataaacaaaaatggatcaacataagttgatgaatctgatacaaattttaaatcaaatacattaactttt 15282718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 218
Target Start/End: Complemental strand, 45610538 - 45610450
Alignment:
Q  130 aaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaatttttt 218  Q
    |||||||||||||||   ||| || |||| |||||| ||||| ||||||| ||||| |||||||||||| ||| ||||||  |||||||    
T  45610538 aaaatgtaaacaaaatttagttaacataagttgatgaatttgatataaatcttgaaccaaatacattaattttagttgacctatttttt 45610450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 234
Target Start/End: Original strand, 46829103 - 46829151
Alignment:
Q  185 atcaaatacattaacttttgttgactaattttttgtctatattttaggac 234  Q
    ||||||||||||||||||||||||| || ||||||  |||||||||||||    
T  46829103 atcaaatacattaacttttgttgaccaa-tttttgcttatattttaggac 46829151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 26439387 - 26439347
Alignment:
Q  163 atgtatttggtataaattttgaatcaaatacattaactttt 203  Q
    ||||||||| || ||||||||||||||||||||||| ||||    
T  26439387 atgtatttgatacaaattttgaatcaaatacattaattttt 26439347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 130 - 217
Target Start/End: Original strand, 41374535 - 41374622
Alignment:
Q  130 aaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttt 217  Q
    ||||||||| |||||| |||| || | || ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  41374535 aaaatgtaagcaaaaatgagtgaacacaagttgatgtatttggtataaactttgaatcaaatacattaactttcgttgactaattttt 41374622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 115 - 209
Target Start/End: Original strand, 16180426 - 16180520
Alignment:
Q  115 tactctctccgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgac 209  Q
    |||| ||||||||| ||||||||| ||||||  |||||| |||||||||||||||   ||||||||||||| |||||||||||||||||||||||    
T  16180426 tactttctccgtcccaaaatgtaagcaaaaattagtcaacataaattgatgtattaaatataaattttgaaccaaatacattaacttttgttgac 16180520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 128 - 217
Target Start/End: Original strand, 43398842 - 43398931
Alignment:
Q  128 ctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttt 217  Q
    |||||||||||  ||||| | |||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||| || |||||||    
T  43398842 ctaaaatgtaagtaaaaatgggtcaatataagttgatgtatttggtacaaattttgaaccaaatacattaacttttgttaacaaattttt 43398931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 114 - 244
Target Start/End: Original strand, 38935353 - 38935482
Alignment:
Q  114 atactctctccgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaat 213  Q
    |||||| ||| |||| ||||| ||| |||||| ||||||| |||| |||||||||||| || | ||||||||  ||||||||||||||||||||| |||     
T  38935353 atactcactctgtcccaaaatataagcaaaaatgagtcaacataagttgatgtatttgatacagattttgaacaaaatacattaacttttgttgagtaa- 38935451  T
Q  214 tttttgtctatattttaggacagaaggagta 244  Q
    ||||||| |||||||| |||| || ||||||    
T  38935452 tttttgtttatatttttggacggatggagta 38935482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 140 - 244
Target Start/End: Complemental strand, 2884350 - 2884247
Alignment:
Q  140 caaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttttgtctatattttaggacagaag 239  Q
    |||||| |||||||||||| || || |||||| ||||||||||||| |||||||||||| |||||||||| |||||||  | ||||||||||||| || |    
T  2884350 caaaaatgagtcaatataatttaatatatttgatataaattttgaaccaaatacattaatttttgttgacaaatttttact-tatattttaggacggatg 2884252  T
Q  240 gagta 244  Q
    |||||    
T  2884251 gagta 2884247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 149 - 217
Target Start/End: Original strand, 4225002 - 4225070
Alignment:
Q  149 gtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttt 217  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||| ||||    
T  4225002 gtcaacataaattgatgtatctggtataaattttgaatcaaatacgataacttttgttgactaaatttt 4225070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 7932836 - 7932760
Alignment:
Q  141 aaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttt 217  Q
    ||||| ||||||| |||| ||||||||| || ||||||||||||| ||||||| |||||||||||||||||||||||    
T  7932836 aaaaatgagtcaacataagttgatgtatctgatataaattttgaaccaaatacgttaacttttgttgactaattttt 7932760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 122 - 201
Target Start/End: Original strand, 24037582 - 24037661
Alignment:
Q  122 tccgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaactt 201  Q
    ||||||||||||||||| |||||| ||||||| |||| ||||| ||||||||| ||||||||||  |||||||| |||||    
T  24037582 tccgtcctaaaatgtaagcaaaaatgagtcaacataagttgatatatttggtacaaattttgaacaaaatacatcaactt 24037661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 208
Target Start/End: Complemental strand, 944891 - 944797
Alignment:
Q  114 atactctctccgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttga 208  Q
    |||||| |||||||  |||||||||  |||||  |||||| |||| ||||||||||||||| ||||||||||  |||||||||||||||| ||||    
T  944891 atactccctccgtctcaaaatgtaagtaaaaattagtcaacataagttgatgtatttggtacaaattttgaactaaatacattaacttttattga 944797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 217
Target Start/End: Original strand, 4445851 - 4445957
Alignment:
Q  111 tatatactctctccgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgact 210  Q
    |||||||||| ||| ||| ||||| ||| ||||||  ||| ||||||||||||||||||||||| ||||||||||  ||||  ||| ||||||| ||| |    
T  4445851 tatatactctttccatcccaaaatataagcaaaaataagttaatataaattgatgtatttggtacaaattttgaacaaaatgtattgacttttgctgatt 4445950  T
Q  211 aattttt 217  Q
    |||||||    
T  4445951 aattttt 4445957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 217
Target Start/End: Complemental strand, 10459385 - 10459283
Alignment:
Q  115 tactctctccgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaatt 214  Q
    ||||| |||||||| ||||||||| |||| |   ||||| |||| |||||| || || || |||||||||| ||||||||||||||||||||||| ||||    
T  10459385 tactccctccgtcccaaaatgtaagcaaagattggtcaacataagttgatgcatctgatacaaattttgaaccaaatacattaacttttgttgaccaatt 10459286  T
Q  215 ttt 217  Q
    |||    
T  10459285 ttt 10459283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 241
Target Start/End: Complemental strand, 16564488 - 16564372
Alignment:
Q  122 tccgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttttgtc 221  Q
    ||||||| |||||||||  ||||| ||||||| |||| ||||||||||||||| |||||||||| |||  ||| |||| ||||| ||| || ||||||      
T  16564488 tccgtcccaaaatgtaagtaaaaatgagtcaacataagttgatgtatttggtacaaattttgaaccaa--acactaacgtttgtagaccaa-tttttgct 16564392  T
Q  222 tatattttaggacagaagga 241  Q
    ||||||||||||| ||||||    
T  16564391 tatattttaggacggaagga 16564372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 19924378 - 19924321
Alignment:
Q  160 ttgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttt 217  Q
    ||||||||||||||| |||||||||| || |||||||||||||| |||||||| ||||    
T  19924378 ttgatgtatttggtacaaattttgaaccatatacattaacttttattgactaactttt 19924321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 208
Target Start/End: Complemental strand, 43042285 - 43042192
Alignment:
Q  115 tactctctccgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttga 208  Q
    ||||| |||| ||| ||||||||| |||||| |||| || | || ||||||||| || ||||||||||||| | |||||||||| |||||||||    
T  43042285 tactccctccatcccaaaatgtaagcaaaaatgagtaaacaaaagttgatgtatctgatataaattttgaaccgaatacattaaattttgttga 43042192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 218
Target Start/End: Original strand, 43465474 - 43465543
Alignment:
Q  149 gtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaatttttt 218  Q
    ||||||| | |||||||||| ||  ||||||||||||  ||||||||||||||||||| |||||||||||    
T  43465474 gtcaataaatattgatgtatctgacataaattttgaacaaaatacattaacttttgttaactaatttttt 43465543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 155 - 227
Target Start/End: Complemental strand, 4592518 - 4592447
Alignment:
Q  155 ataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttttgtctatatt 227  Q
    ||||| ||||||||||| || ||||||  ||||||||||||||| |||||||||| |||||||||| ||||||    
T  4592518 ataaactgatgtatttgatacaaatttaaaatcaaatacattaatttttgttgac-aattttttgtttatatt 4592447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 164 - 244
Target Start/End: Original strand, 17437166 - 17437245
Alignment:
Q  164 tgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttttgtctatattttaggacagaaggagta 244  Q
    ||||||||||| ||||||||||  ||||||||||| |||||||||| || ||||||| |||||||| |||| || ||||||    
T  17437166 tgtatttggtacaaattttgaactaaatacattaatttttgttgac-aaatttttgtttatattttgggacggagggagta 17437245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 130 - 218
Target Start/End: Original strand, 35311191 - 35311278
Alignment:
Q  130 aaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaatttttt 218  Q
    ||||||||| |||||| | ||||| |||| || || ||| | ||| |||||||||| |||||||||||||||||||||||||| |||||    
T  35311191 aaaatgtaagcaaaaatgggtcaacataagtt-atatatcttgtacaaattttgaaccaaatacattaacttttgttgactaaattttt 35311278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 31469142 - 31469088
Alignment:
Q  163 atgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttt 217  Q
    ||||||||| || ||||||| || ||||||||||||||||||||||| |||||||    
T  31469142 atgtatttgatacaaatttttaaccaaatacattaacttttgttgaccaattttt 31469088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 11386393 - 11386308
Alignment:
Q  150 tcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttt-tgtctatattttaggac 234  Q
    |||| |||| |||||||||||| || ||||||||||| ||||| ||||| |||||||||  ||||||| | | |||||||||||||    
T  11386393 tcaacataagttgatgtatttgatacaaattttgaattaaatatattaatttttgttgatcaatttttgtttatatattttaggac 11386308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 217
Target Start/End: Original strand, 29291061 - 29291157
Alignment:
Q  121 ctccgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttt 217  Q
    |||||||| || ||||||  ||||| || |||| |||||||||||||| | ||| |  ||||||| |||||| |||||||||| ||||| |||||||    
T  29291061 ctccgtcccaatatgtaagaaaaaatgaatcaacataaattgatgtatctagtaaattttttgaaccaaatatattaacttttattgaccaattttt 29291157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 217
Target Start/End: Original strand, 31469068 - 31469164
Alignment:
Q  121 ctccgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttt 217  Q
    |||||||| ||||| ||| ||||||   ||||| | || || |||||||||||  ||| |||| |||||||||||||||||| |||||| |||||||    
T  31469068 ctccgtcccaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtatcaaatacattaactttcgttgaccaattttt 31469164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 194
Target Start/End: Original strand, 1862671 - 1862725
Alignment:
Q  140 caaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaataca 194  Q
    |||||| ||||||| |||| ||||||||||||  | |||||||||||||||||||    
T  1862671 caaaaatgagtcaacataagttgatgtatttgacacaaattttgaatcaaataca 1862725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 206
Target Start/End: Original strand, 15244021 - 15244067
Alignment:
Q  160 ttgatgtatttggtataaattttgaatcaaatacattaacttttgtt 206  Q
    ||||||||| | || |||||||||||||| |||||||||||||||||    
T  15244021 ttgatgtatctagtctaaattttgaatcagatacattaacttttgtt 15244067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 15258824 - 15258886
Alignment:
Q  147 gagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgac 209  Q
    ||||||| | |||||||||||| | || ||||||||||| || | ||||||||||||||||||    
T  15258824 gagtcaacaaaaattgatgtatctagtctaaattttgaaccagacacattaacttttgttgac 15258886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 209
Target Start/End: Complemental strand, 36089540 - 36089478
Alignment:
Q  147 gagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgac 209  Q
    |||| |||| || ||||||||| | || |||||||||||||| |||| |||||||||||||||    
T  36089540 gagttaataaaagttgatgtatctagtttaaattttgaatcagatacgttaacttttgttgac 36089478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 209
Target Start/End: Complemental strand, 5388875 - 5388842
Alignment:
Q  176 aaattttgaatcaaatacattaacttttgttgac 209  Q
    ||||||||||||||||||||||| ||||||||||    
T  5388875 aaattttgaatcaaatacattaatttttgttgac 5388842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 246
Target Start/End: Complemental strand, 24037697 - 24037573
Alignment:
Q  121 ctccgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttttgt 220  Q
    ||||||||||||| |||| |||||| | ||| | |||| ||||||||||| ||  ||| |||| | |||||| || ||||| |||||||| | ||||||     
T  24037697 ctccgtcctaaaaagtaagcaaaaatgggtcgacataagttgatgtattttgttcaaaatttgtaccaaatatatcaacttatgttgactca-tttttgc 24037599  T
Q  221 ctatattttaggacagaaggagtaca 246  Q
     || |||||||||| || ||||||||    
T  24037598 ttacattttaggacggatggagtaca 24037573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 184
Target Start/End: Complemental strand, 41099097 - 41099028
Alignment:
Q  115 tactctctccgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttga 184  Q
    |||||| ||||| | ||||||||| |||||| | ||||| |||| || |||||||||||| |||||||||    
T  41099097 tactctatccgttccaaaatgtaagcaaaaatgggtcaacataagttaatgtatttggtacaaattttga 41099028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 44726815 - 44726876
Alignment:
Q  157 aaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaatttttt 218  Q
    |||||||| |||||| |||||||||| ||  ||||||||||| |||||||||  ||||||||    
T  44726815 aaattgatatatttgatataaattttaaactaaatacattaatttttgttgatcaatttttt 44726876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 217
Target Start/End: Complemental strand, 2949127 - 2949059
Alignment:
Q  149 gtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttt 217  Q
    ||||| |||||||||||||| ||  || |||||||||  |||||||||| |||||||| || |||||||    
T  2949127 gtcaacataaattgatgtatatgacattaattttgaacaaaatacattagcttttgttaaccaattttt 2949059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 215
Target Start/End: Original strand, 14166712 - 14166780
Alignment:
Q  147 gagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattt 215  Q
    ||||| ||| || |||||||||||| | || ||| |||| ||||||||| |||||||||||||| ||||    
T  14166712 gagtcgataaaagttgatgtatttgttttatattatgaaccaaatacataaacttttgttgactcattt 14166780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 15660703 - 15660770
Alignment:
Q  176 aaattttgaatcaaatacattaacttttgttgactaattttttgtctatattttaggacagaaggagta 244  Q
    ||||||||||||||||||||||| || |||||| | | ||||||  ||||||||||||| || ||||||    
T  15660703 aaattttgaatcaaatacattaatttgtgttga-tcaatttttgcttatattttaggactgatggagta 15660770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 36597169 - 36597121
Alignment:
Q  150 tcaatataaattgatgtatttggtataaattttgaatcaaatacattaa 198  Q
    |||||||| |||||||||| || || ||||||| |||||||||||||||    
T  36597169 tcaatatatattgatgtatctgttacaaattttaaatcaaatacattaa 36597121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 195
Target Start/End: Original strand, 40823552 - 40823600
Alignment:
Q  147 gagtcaatataaattgatgtatttggtataaattttgaatcaaatacat 195  Q
    ||||||| |||| |||||||||||| |||||||||| || |||||||||    
T  40823552 gagtcaacataatttgatgtatttgatataaattttaaaccaaatacat 40823600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 125 - 217
Target Start/End: Complemental strand, 36049 - 35957
Alignment:
Q  125 gtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttt 217  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||| || |||||||| | |||||||||||||  |||||||  |||||||    
T  36049 gtcccaaaatgtaaacaaaaatgagtcaatataaattgatgtatttgatacaaattttgtaccaaatacattaacggttgttgatcaattttt 35957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 114 - 217
Target Start/End: Original strand, 29110949 - 29111052
Alignment:
Q  114 atactctctccgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaat 213  Q
    |||||||||||||| |||||||||| ||| ||   ||||||||||||  ||||||||||||||||||||||| |||||||||||| ||| |||||  |||    
T  29110949 atactctctccgtcgtaaaatgtaagcaataataggtcaatataaatgaatgtatttggtataaattttgaaccaaatacattaagtttcgttgatcaat 29111048  T
Q  214 tttt 217  Q
    ||||    
T  29111049 tttt 29111052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 15114696 - 15114633
Alignment:
Q  155 ataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaatttttt 218  Q
    ||||||||| |||||| | | ||||||||||||||||||||||| |||||||||| ||||||||    
T  15114696 ataaattgacgtatttagaacaaattttgaatcaaatacattaatttttgttgaccaatttttt 15114633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 229
Target Start/End: Original strand, 37627908 - 37628013
Alignment:
Q  122 tccgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttttgtc 221  Q
    ||||| |||||||||||  |||||  ||| ||||||| |||||||||||| || ||||||||||||||| | ||||||||||||| | ||| |||||||     
T  37627908 tccgttctaaaatgtaagtaaaaataagttaatataagttgatgtatttgatacaaattttgaatcaaa-atattaacttttgtt-aataaatttttgtt 37628005  T
Q  222 tatatttt 229  Q
    ||||||||    
T  37628006 tatatttt 37628013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 163 - 245
Target Start/End: Complemental strand, 8777840 - 8777759
Alignment:
Q  163 atgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttttgtctatattttaggacagaaggagtac 245  Q
    ||||||||  ||||||||||||| |||||| ||||||||||||||| | | ||||||| ||||||||| ||| ||||||||||    
T  8777840 atgtatttaatataaattttgaaccaaatatattaacttttgttga-tcaatttttgtttatattttaagacggaaggagtac 8777759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 114 - 244
Target Start/End: Original strand, 9548040 - 9548168
Alignment:
Q  114 atactctctccgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaat 213  Q
    ||||||||| ||||| |||||| ||  ||||| ||||||| |||| ||||||||||| ||| |||||||||| |||||| | ||| |||||||||  ||     
T  9548040 atactctcttcgtcccaaaatgcaag-aaaaatgagtcaacataagttgatgtatttagtacaaattttgaaccaaatataataatttttgttgaacaa- 9548137  T
Q  214 tttttgtctatattttaggacagaaggagta 244  Q
    ||||||| ||||||||| |||| | ||||||    
T  9548138 tttttgtttatattttaagacaaatggagta 9548168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 130 - 215
Target Start/End: Original strand, 29797946 - 29798034
Alignment:
Q  130 aaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttga---atcaaatacattaacttttgttgactaattt 215  Q
    ||||||||| |||||| |||| || ||||||| |||||||||||| |||||||||   | |||||||||||| |||||||||| |||||    
T  29797946 aaaatgtaagcaaaaatgagttaacataaatttatgtatttggtacaaattttgaaccaacaaatacattaatttttgttgaccaattt 29798034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 217
Target Start/End: Original strand, 7974778 - 7974879
Alignment:
Q  116 actctctccgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattt 215  Q
    |||| |||| ||| ||||| |||| || || | ||||| ||||||||| |||||||||| |||||||||   |||||||||||||||| ||||| |||||    
T  7974778 actccctccttccaaaaatataaaaaagaatgggtcaacataaattgacgtatttggtacaaattttgacaaaaatacattaacttttattgaccaattt 7974877  T
Q  216 tt 217  Q
    ||    
T  7974878 tt 7974879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 149 - 217
Target Start/End: Complemental strand, 13210049 - 13209981
Alignment:
Q  149 gtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttt 217  Q
    ||||| |||| ||||||||| || || |||||||||| ||||||||||||||||||||||  |||||||    
T  13210049 gtcaacataagttgatgtatctgatacaaattttgaaccaaatacattaacttttgttgatcaattttt 13209981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 130 - 234
Target Start/End: Original strand, 35901041 - 35901144
Alignment:
Q  130 aaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttttgtctatatttt 229  Q
    ||||| ||| |||||| ||||||| |||| |||||||| || ||| |||||||||  | |||||||||||||||||||||  | ||||||  ||||||||    
T  35901041 aaaatataagcaaaaatgagtcaacataagttgatgtaattagtacaaattttgagcccaatacattaacttttgttgaccta-tttttgcttatatttt 35901139  T
Q  230 aggac 234  Q
    |||||    
T  35901140 aggac 35901144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 217
Target Start/End: Complemental strand, 28725678 - 28725603
Alignment:
Q  141 aaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttt 217  Q
    ||||| ||||||||| || ||||||||| || |||||||| ||||||||||||| ||| |||| ||||| |||||||    
T  28725678 aaaaatgagtcaataaaagttgatgtatctg-tataaattctgaatcaaatacaataaattttattgaccaattttt 28725603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 115 - 242
Target Start/End: Original strand, 33557766 - 33557892
Alignment:
Q  115 tactctctccgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaatt 214  Q
    |||||| ||| || |||||||||| ||||||    |||| |||| || ||||||||| || ||||||||||  |||||||||||||||| ||||  ||||    
T  33557766 tactctttccatcttaaaatgtaagcaaaaaatgatcaacataagtttatgtatttgatacaaattttgaactaaatacattaacttttattgatcaatt 33557865  T
Q  215 ttttgtctatattttaggacagaaggag 242  Q
    |||  | ||| |||||||||||| ||||    
T  33557866 tttact-tatgttttaggacagatggag 33557892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 11114320 - 11114262
Alignment:
Q  150 tcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttga 208  Q
    |||| |||| ||||||||||||||||||||||| ||   |||||||||| |||||||||    
T  11114320 tcaacataagttgatgtatttggtataaattttaaactgaatacattaatttttgttga 11114262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 11196253 - 11196301
Alignment:
Q  160 ttgatgtatttggtataaattttgaatcaaatacattaacttttgttga 208  Q
    |||||||||||  || ||||||||||| ||||||||||| |||||||||    
T  11196253 ttgatgtatttaatacaaattttgaattaaatacattaatttttgttga 11196301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 130 - 217
Target Start/End: Complemental strand, 44816571 - 44816484
Alignment:
Q  130 aaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttt 217  Q
    ||||||||| |||||| || | |||||||| |||||||||||||| |||||||||| ||||||||||||||||||||| | |||||||    
T  44816571 aaaatgtaagcaaaaatgaattaatataaactgatgtatttggtacaaattttgaaccaaatacattaacttttgttggccaattttt 44816484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 124 - 217
Target Start/End: Original strand, 18731990 - 18732083
Alignment:
Q  124 cgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttt 217  Q
    ||||| ||||| ||| |||||| |  |||| |||||||||||||| |||||||||||||||| ||||||||||||||||| ||||| |||||||    
T  18731990 cgtcccaaaatataagcaaaaatggatcaacataaattgatgtatctggtataaattttgaaccaaatacattaacttttattgaccaattttt 18732083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 122 - 209
Target Start/End: Complemental strand, 6803419 - 6803332
Alignment:
Q  122 tccgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgac 209  Q
    |||||||||||||| || |||||||||||||| | || |||  |||||||||| ||||||| ||  ||||||||||||||||||||||    
T  6803419 tccgtcctaaaatgcaagcaaaaacgagtcaacacaagttggcgtatttggtacaaattttaaactaaatacattaacttttgttgac 6803332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 215
Target Start/End: Original strand, 32652412 - 32652497
Alignment:
Q  130 aaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattt 215  Q
    |||||||||  |||||  |||||| |||||||| ||||||||||| ||| |||||| |||||||||||| |||| |||| ||||||    
T  32652412 aaaatgtaagtaaaaataagtcaacataaattggtgtatttggtacaaactttgaaccaaatacattaatttttattgagtaattt 32652497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 217
Target Start/End: Original strand, 16866427 - 16866494
Alignment:
Q  150 tcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttt 217  Q
    |||||| || || ||||||| |||| ||||||| || ||||||||||||||||||||||| |||||||    
T  16866427 tcaataaaagttaatgtattaggtacaaatttttaaccaaatacattaacttttgttgaccaattttt 16866494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 217
Target Start/End: Original strand, 23971211 - 23971278
Alignment:
Q  150 tcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttt 217  Q
    ||||||||| ||||||||||||||| ||||||||||  ||||| ||| | |||||||||| |||||||    
T  23971211 tcaatataagttgatgtatttggtacaaattttgaactaaatatatttatttttgttgaccaattttt 23971278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 217
Target Start/End: Complemental strand, 27147665 - 27147614
Alignment:
Q  166 tatttggtataaattttgaatcaaatacattaacttttgttgactaattttt 217  Q
    ||||| || |||| |||| |||||||||||||||||||||||||||||||||    
T  27147665 tatttagtttaaaatttgtatcaaatacattaacttttgttgactaattttt 27147614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 205
Target Start/End: Complemental strand, 30483972 - 30483889
Alignment:
Q  122 tccgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgt 205  Q
    ||||||||||||| |||| |||||   |||||||||| ||||||| ||||||  ||||||||||  |||||| |||||||||||    
T  30483972 tccgtcctaaaatataaagaaaaatcggtcaatataagttgatgtgtttggtccaaattttgaactaaatacgttaacttttgt 30483889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 209
Target Start/End: Complemental strand, 30794525 - 30794466
Alignment:
Q  150 tcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgac 209  Q
    |||| ||||||  |||||||||||| ||||||||||||||||| ||||| ||||||||||    
T  30794525 tcaacataaatgaatgtatttggtacaaattttgaatcaaatatattaaattttgttgac 30794466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 4259324 - 4259387
Alignment:
Q  142 aaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgtt 206  Q
    |||| ||||||| |||| || ||||||||  ||||||||||||| ||||||||||||||||||||    
T  4259324 aaaatgagtcaacataagttaatgtatttactataaattttgaa-caaatacattaacttttgtt 4259387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 238
Target Start/End: Complemental strand, 5026219 - 5026137
Alignment:
Q  155 ataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttttgtctatattttaggacagaa 238  Q
    |||| ||||||||||||||| |||||||| |  ||||| ||||||||||||| || || ||||||  |||||||| ||||||||    
T  5026219 ataagttgatgtatttggtacaaattttggactaaatatattaacttttgttaaccaa-tttttgcttatattttgggacagaa 5026137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 203
Target Start/End: Complemental strand, 14773564 - 14773502
Alignment:
Q  141 aaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaactttt 203  Q
    ||||| |||||||  ||| ||||||||| || ||||||||||||| || ||||||||||||||    
T  14773564 aaaaatgagtcaacgtaagttgatgtatctgatataaattttgaaccacatacattaactttt 14773502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 203
Target Start/End: Complemental strand, 15224016 - 15223954
Alignment:
Q  141 aaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaactttt 203  Q
    ||||| |||||||  ||| ||||||||| || ||||||||||||| || ||||||||||||||    
T  15224016 aaaaatgagtcaacgtaagttgatgtatctgatataaattttgaaccacatacattaactttt 15223954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 209
Target Start/End: Original strand, 47186898 - 47186932
Alignment:
Q  175 taaattttgaatcaaatacattaacttttgttgac 209  Q
    ||||||||||||||||||||| |||||||||||||    
T  47186898 taaattttgaatcaaatacatcaacttttgttgac 47186932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 219
Target Start/End: Original strand, 47967903 - 47968008
Alignment:
Q  114 atactctctccgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaat 213  Q
    ||||||| ||||||| ||||| |||||||||    ||||| | ||||| |||||||| || |||| |||| |  |||||||||||||| |||||| | ||    
T  47967903 atactctatccgtcccaaaatataaacaaaattcggtcaacaaaaatttatgtatttagtttaaaatttgtactaaatacattaacttatgttgattcat 47968002  T
Q  214 tttttg 219  Q
    ||||||    
T  47968003 tttttg 47968008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 124 - 208
Target Start/End: Complemental strand, 13284 - 13200
Alignment:
Q  124 cgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttga 208  Q
    |||||||||||||||  |||||||||| ||||||| ||||||||| | ||| ||||||| || ||||||||||||||||||||||    
T  13284 cgtcctaaaatgtaagtaaaaacgagttaatataagttgatgtatcttgtacaaattttaaaccaaatacattaacttttgttga 13200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 124 - 216
Target Start/End: Original strand, 37918914 - 37919006
Alignment:
Q  124 cgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaatttt 216  Q
    ||||| ||||||||| |||||| || |||| |||| |||||||||||| |||||||||| || |||||||||| |||||||||||| ||||||    
T  37918914 cgtcccaaaatgtaagcaaaaatgaatcaacataagttgatgtatttgatataaattttaaaccaaatacattcacttttgttgacaaatttt 37919006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 130 - 215
Target Start/End: Original strand, 3693993 - 3694078
Alignment:
Q  130 aaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattt 215  Q
    |||||||||  | ||| ||||||| ||||||||||||||||  || ||||||||||||||||||||||| |||||||||| |||||    
T  3693993 aaaatgtaagtagaaatgagtcaacataaattgatgtatttaatacaaattttgaatcaaatacattaatttttgttgaccaattt 3694078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 156 - 216
Target Start/End: Complemental strand, 30296000 - 30295940
Alignment:
Q  156 taaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaatttt 216  Q
    |||| ||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||    
T  30296000 taaaatgatgtatttggtataatttttgaatcaaatacaataacttttgttgaccaatttt 30295940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 244
Target Start/End: Complemental strand, 47543673 - 47543590
Alignment:
Q  160 ttgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttttgtctatattttaggacagaaggagta 244  Q
    ||||||||||||||| |||||||||| ||||| |||||| |||||||||| |||||||| | ||||||||| |||||| ||||||    
T  47543673 ttgatgtatttggtacaaattttgaaccaaattcattaatttttgttgaccaattttttat-tatattttaagacagagggagta 47543590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 130 - 217
Target Start/End: Complemental strand, 30693439 - 30693352
Alignment:
Q  130 aaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttt 217  Q
    |||||||||  ||||| || |||| ||||  |||||||||||||| ||||||||||||||||||||||| |||||||||  |||||||    
T  30693439 aaaatgtaagtaaaaatgaatcaacataatatgatgtatttggtacaaattttgaatcaaatacattaatttttgttgatcaattttt 30693352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 237
Target Start/End: Original strand, 5056317 - 5056406
Alignment:
Q  147 gagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttttgtctatattttaggacaga 237  Q
    ||||||| |||| |||||||||||| || |||||||||||||||||| |||| |||| ||||| || ||||||| |||||||| |||||||    
T  5056317 gagtcaacataagttgatgtatttgatacaaattttgaatcaaatacgttaatttttattgaccaa-tttttgtttatattttgggacaga 5056406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 3739853 - 3739923
Alignment:
Q  163 atgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttttgtctatattttaggac 234  Q
    |||||||||||| ||||||| || ||||||||||||||||||||||| || ||||||  |||||||||||||    
T  3739853 atgtatttggtacaaatttttaaccaaatacattaacttttgttgaccaa-tttttgcttatattttaggac 3739923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 9238229 - 9238288
Alignment:
Q  149 gtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttga 208  Q
    |||||| ||||||||||| || |||||||||||||||||||||| ||||| |||||||||    
T  9238229 gtcaatttaaattgatgttttgggtataaattttgaatcaaatatattaatttttgttga 9238288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 122 - 217
Target Start/End: Original strand, 19758268 - 19758364
Alignment:
Q  122 tccgtcctaaaatgtaaacaaaaacgagtc-aatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttt 217  Q
    ||||||| ||||||||| |||||| ||||  ||  ||| ||||||||||||||| ||||| | ||  |||||||||||||||||||||| |||||||    
T  19758268 tccgtcccaaaatgtaagcaaaaatgagtataacgtaagttgatgtatttggtacaaattataaactaaatacattaacttttgttgaccaattttt 19758364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 24023976 - 24024043
Alignment:
Q  176 aaattttgaatcaaatacattaacttttgttgactaattttttgtctatattttaggacagaaggagta 244  Q
    |||||||||| || |||||||||||||||||||  |||||||||| ||||||||||||| || ||||||    
T  24023976 aaattttgaaccacatacattaacttttgttgatcaattttttgt-tatattttaggacggatggagta 24024043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 33679021 - 33678969
Alignment:
Q  157 aaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgac 209  Q
    ||||||||||||||||| ||||||||| |||||||| |||||||||| |||||    
T  33679021 aaattgatgtatttggtttaaattttggatcaaatatattaactttttttgac 33678969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 217
Target Start/End: Original strand, 35310271 - 35310345
Alignment:
Q  142 aaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttt 217  Q
    |||||||| ||| ||||||||||| || |  |||||||||| ||||||||||||||| |||||||||| |||||||    
T  35310271 aaaacgagccaacataaattgatggatcta-tataaattttaaatcaaatacattaatttttgttgaccaattttt 35310345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 196
Target Start/End: Original strand, 27527711 - 27527777
Alignment:
Q  130 aaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacatt 196  Q
    ||||| |||| ||||| | || ||||||| ||||||||| |||||||||||||||| ||||||||||    
T  27527711 aaaatataaataaaaatgggtaaatataagttgatgtatctggtataaattttgaaccaaatacatt 27527777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 121 - 246
Target Start/End: Complemental strand, 3739927 - 3739803
Alignment:
Q  121 ctccgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttttgt 220  Q
    |||||||||||||| ||| ||||||   ||||| | || || |||||||||||  ||| |||| | |||||||||||||||| |||||| || ||||||     
T  3739927 ctccgtcctaaaatataagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaactttcgttgaccaa-tttttgc 3739829  T
Q  221 ctatattttaggacagaaggagtaca 246  Q
     |||||||| |||| || ||||||||    
T  3739828 ttatattttgggacggagggagtaca 3739803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 205
Target Start/End: Complemental strand, 24922485 - 24922406
Alignment:
Q  125 gtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgt 205  Q
    |||| ||||| | |||||||| ||||||||| || |||||||||||||| || ||||||||| ||| |||| |||||||||    
T  24922485 gtccaaaaatatcaacaaaaatgagtcaata-aagttgatgtatttggtctacattttgaattaaaaacataaacttttgt 24922406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 189
Target Start/End: Original strand, 38067164 - 38067198
Alignment:
Q  155 ataaattgatgtatttggtataaattttgaatcaa 189  Q
    |||||||||||||||| ||||||||||||||||||    
T  38067164 ataaattgatgtatttagtataaattttgaatcaa 38067198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 216
Target Start/End: Complemental strand, 29855129 - 29855076
Alignment:
Q  163 atgtatttggtataaattttgaatcaaatacattaacttttgttgactaatttt 216  Q
    |||||||| ||| ||||||| || ||||||||| |||||||||||| |||||||    
T  29855129 atgtatttcgtacaaatttttaaccaaatacatcaacttttgttgattaatttt 29855076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 26265785 - 26265853
Alignment:
Q  130 aaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaa 198  Q
    ||||||||| ||||||   || || |||| ||||||||||| |||||||||||||| ||||||| ||||    
T  26265785 aaaatgtaagcaaaaatatgttaacataagttgatgtatttagtataaattttgaaccaaatactttaa 26265853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 112 - 239
Target Start/End: Complemental strand, 35003881 - 35003755
Alignment:
Q  112 atatactctctccgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgacta 211  Q
    ||||||||  |||||| |||||||||| |||||| || |||| |||| ||||| ||||| ||| ||||||||||||||||||||||| |||| || || |    
T  35003881 atatactccatccgtcttaaaatgtaagcaaaaatgaatcaacataagttgatatattttgtacaaattttgaatcaaatacattaatttttattaacca 35003782  T
Q  212 attttttgtctatattttaggacagaag 239  Q
    ||||||  | ||||||||||||| ||||    
T  35003781 atttttact-tatattttaggacggaag 35003755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 115 - 209
Target Start/End: Complemental strand, 30531297 - 30531203
Alignment:
Q  115 tactctctccgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgac 209  Q
    ||||| |||||||| ||||||||| |||||| || |||| |||| ||||||||||||||| ||| |||||| ||||||||| ||||| |||||||    
T  30531297 tactccctccgtcccaaaatgtaagcaaaaatgactcaacataagttgatgtatttggtacaaactttgaaccaaatacatcaacttatgttgac 30531203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 115 - 217
Target Start/End: Complemental strand, 31323933 - 31323831
Alignment:
Q  115 tactctctccgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaatt 214  Q
    ||||| ||| |||| ||||||||| ||||||   ||||| |||| ||||||||| ||||| ||||||||||  |||||||||||||||||||||| ||||    
T  31323933 tactccctctgtcccaaaatgtaagcaaaaataggtcaacataagttgatgtatctggtacaaattttgaacaaaatacattaacttttgttgaccaatt 31323834  T
Q  215 ttt 217  Q
    |||    
T  31323833 ttt 31323831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 130 - 216
Target Start/End: Original strand, 31522614 - 31522700
Alignment:
Q  130 aaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaatttt 216  Q
    ||||||||| ||||||  ||| ||||||||  ||||||| ||||| |||||||||||||||| ||||||||||||||||| ||||||    
T  31522614 aaaatgtaagcaaaaataagttaatataaaacgatgtatctggtacaaattttgaatcaaatgcattaacttttgttgaccaatttt 31522700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 148 - 217
Target Start/End: Complemental strand, 9829977 - 9829908
Alignment:
Q  148 agtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttt 217  Q
    |||||| |||||||||||||||||||| ||||||| ||  ||||||||||| ||||||||||||||||||    
T  9829977 agtcaacataaattgatgtatttggtacaaattttaaacaaaatacattaatttttgttgactaattttt 9829908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 219
Target Start/End: Complemental strand, 2282521 - 2282413
Alignment:
Q  111 tatatactctctccgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgact 210  Q
    ||||||||  |||||||| || || ||| ||||||  ||| || ||||||||||||||||| || || |||||||  ||||||||||||||||||||||     
T  2282521 tatatacttcctccgtcccaatatataagcaaaaattagttaacataaattgatgtatttgatacaatttttgaactaaatacattaacttttgttgacc 2282422  T
Q  211 aattttttg 219  Q
    |||||||||    
T  2282421 aattttttg 2282413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 157 - 216
Target Start/End: Original strand, 28004656 - 28004715
Alignment:
Q  157 aaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaatttt 216  Q
    ||||| |||||||||||| |||||||||  ||||||||||||||||||||||||||||||    
T  28004656 aaattaatgtatttggtacaaattttgagccaaatacattaacttttgttgactaatttt 28004715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 217
Target Start/End: Original strand, 8437813 - 8437867
Alignment:
Q  163 atgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttt 217  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||    
T  8437813 atgtatttggtacaaattttgaatcaaatacattaatttttgttgactaaatttt 8437867  T

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Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 234
Target Start/End: Complemental strand, 1986325 - 1986205
Alignment:
Q  113 tatactctctccgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaa 212  Q
    ||||||| || |||||||||||||||| |||||  |||||| |||| || || ||||||||||||||||| ||  |||| |||||| |||| ||||| ||    
T  1986325 tatactccctacgtcctaaaatgtaaataaaaatcagtcaacataagttaatatatttggtataaattttaaactaaatgcattaatttttattgaccaa 1986226  T
Q  213 ttttttgtctatattttaggac 234  Q
     ||||  | |||||||||||||    
T  1986225 cttttact-tatattttaggac 1986205  T

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Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 209
Target Start/End: Complemental strand, 14446818 - 14446721
Alignment:
Q  112 atatactctctccgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgac 209  Q
    |||||||| |||||||| |||||||||  |||||   |||||| ||| ||||||||| |  |||||||||||||  | ||||||||||||||||||||    
T  14446818 atatactccctccgtcccaaaatgtaagtaaaaattggtcaatgtaagttgatgtatctaatataaattttgaacaacatacattaacttttgttgac 14446721  T

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Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 215
Target Start/End: Complemental strand, 1937751 - 1937664
Alignment:
Q  128 ctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattt 215  Q
    ||||||||||| |||||| || | ||||||| |||||| |||| ||||||||||| ||||||||| || || |||||| ||| |||||    
T  1937751 ctaaaatgtaagcaaaaatgaattaatataagttgatgaatttagtataaattttaaatcaaatatataaatttttgtcgaccaattt 1937664  T

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Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 217
Target Start/End: Original strand, 30531184 - 30531271
Alignment:
Q  130 aaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttt 217  Q
    ||||||||| |||||||| ||||| |||| ||||||||||||||  ||| |||| | ||||||||| ||||| |||||| | ||||||    
T  30531184 aaaatgtaagcaaaaacgggtcaacataagttgatgtatttggttcaaagtttgtaccaaatacatcaacttatgttgagtcattttt 30531271  T

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Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 14222897 - 14222833
Alignment:
Q  130 aaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaataca 194  Q
    ||||||||| |||||| | ||||| |||| ||||||||| |||| |||||||||||| |||||||    
T  14222897 aaaatgtaagcaaaaatgggtcaacataagttgatgtatatggtgtaaattttgaataaaataca 14222833  T

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Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 130 - 217
Target Start/End: Complemental strand, 13422236 - 13422149
Alignment:
Q  130 aaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttt 217  Q
    |||||||||| |||||   || || ||||||| || ||| ||||||||||||| ||||||||||||||| |||| ||||  |||||||    
T  13422236 aaaatgtaaataaaaataggttaacataaattaatatatctggtataaattttaaatcaaatacattaatttttattgagcaattttt 13422149  T

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Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 201
Target Start/End: Original strand, 9675753 - 9675839
Alignment:
Q  115 tactctctccgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaactt 201  Q
    ||||| |||||||  ||||||||| ||||||   ||||| |||| |||||| || ||||| |||||||| || ||||||||||||||    
T  9675753 tactccctccgtctcaaaatgtaagcaaaaattggtcaacataagttgatgcatctggtacaaattttgtattaaatacattaactt 9675839  T

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Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 208
Target Start/End: Original strand, 24640120 - 24640174
Alignment:
Q  154 tataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttga 208  Q
    ||||||||||||||||   |||||||||||||  ||||| |||||||||||||||    
T  24640120 tataaattgatgtattcattataaattttgaactaaataaattaacttttgttga 24640174  T

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Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 206
Target Start/End: Complemental strand, 29004250 - 29004192
Alignment:
Q  148 agtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgtt 206  Q
    |||||||| ||| |||| |||||||| || ||||| |||||||||||| ||||||||||    
T  29004250 agtcaataaaaagtgatatatttggtttatatttttaatcaaatacatcaacttttgtt 29004192  T

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Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 206
Target Start/End: Complemental strand, 33822370 - 33822316
Alignment:
Q  152 aatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgtt 206  Q
    ||||||| |||||||||||| || ||||||||||  ||||| |||||||||||||    
T  33822370 aatataagttgatgtatttgatacaaattttgaactaaatatattaacttttgtt 33822316  T

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Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 18325439 - 18325382
Alignment:
Q  160 ttgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttt 217  Q
    |||||||||||||| |||  ||||||| |||||||| ||||||  |||||||||||||    
T  18325439 ttgatgtatttggtctaagatttgaataaaatacatcaactttgtttgactaattttt 18325382  T

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Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 197
Target Start/End: Original strand, 24547196 - 24547245
Alignment:
Q  148 agtcaatataaattgatgtatttggtataaattttgaatcaaatacatta 197  Q
    |||||| ||||||||||||||||| |||||||||| || ||| |||||||    
T  24547196 agtcaacataaattgatgtatttgatataaattttaaaccaagtacatta 24547245  T

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Target: scaffold2113 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold2113
Description:

Target: scaffold2113; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 618 - 668
Alignment:
Q  166 tatttggtataaattttgaatcaaatacattaacttttgttgactaatttt 216  Q
    ||||||||| ||||||||||  ||||||| |||||||||||||||||||||    
T  618 tatttggtacaaattttgaactaaatacaataacttttgttgactaatttt 668  T

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Target: scaffold0009 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 51246 - 51300
Alignment:
Q  149 gtcaatataaattgatgtatttggtataaattttgaatcaaatacattaactttt 203  Q
    ||||| |||| ||||||||||||||||||||||||||  ||||||||||| ||||    
T  51246 gtcaacataagttgatgtatttggtataaattttgaactaaatacattaattttt 51300  T

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Target: scaffold0650 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 69 - 19
Alignment:
Q  160 ttgatgtatttggtataaattttgaatcaaatacattaacttttgttgact 210  Q
    |||||||||||||  |||||||| || ||||||||| ||||||||||||||    
T  69 ttgatgtatttggactaaatttttaaccaaatacatcaacttttgttgact 19  T

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Target: scaffold0236 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 14605 - 14551
Alignment:
Q  163 atgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttt 217  Q
    ||||||||  |||||||||| |||||||||||||||||||  |||| ||||||||    
T  14605 atgtatttaatataaattttaaatcaaatacattaactttgattgattaattttt 14551  T

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Target: scaffold0034 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 208
Target Start/End: Complemental strand, 95058 - 94972
Alignment:
Q  122 tccgtcctaaaatgtaaacaaaaacgagtcaatataaattgatgtatttggtataaattttgaatcaaatacattaacttttgttga 208  Q
    |||||| ||||||||||  |||||   ||||| |||| ||||||||||||||| ||||||||||   |||||||||| |||| ||||    
T  95058 tccgtcttaaaatgtaataaaaaattggtcaacataagttgatgtatttggtacaaattttgaacataatacattaatttttattga 94972  T

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Target: scaffold0230 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 18916 - 18973
Alignment:
Q  160 ttgatgtatttggtataaattttgaatcaaatacattaacttttgttgactaattttt 217  Q
    |||||||||||||| |||  ||||||| |||||||| ||||||  |||||||||||||    
T  18916 ttgatgtatttggtctaagatttgaataaaatacatcaactttgtttgactaattttt 18973  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 312805 - 312753
Alignment:
Q  157 aaattgatgtatttggtataaattttgaatcaaatacattaacttttgttgac 209  Q
    |||||||||||| | || |||| |||| |||| ||||||||||||||||||||    
T  312805 aaattgatgtatctagtttaaaatttggatcagatacattaacttttgttgac 312753  T

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