View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19753_low_5 (Length: 305)

Name: NF19753_low_5
Description: NF19753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19753_low_5
NF19753_low_5
[»] chr5 (6 HSPs)
chr5 (20-107)||(12812652-12812739)
chr5 (33-107)||(12749573-12749647)
chr5 (20-107)||(12749629-12749716)
chr5 (20-107)||(12812721-12812808)
chr5 (20-97)||(12812583-12812660)
chr5 (20-85)||(12749491-12749556)


Alignment Details
Target: chr5 (Bit Score: 84; Significance: 6e-40; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 12812652 - 12812739
Alignment:
Q  20 tggaggaggttacgctggtgggggagagcatggcgagtctggctatggaggtggcaaaggaggtggagctggaggaggctatggtggt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12812652 tggaggaggttacgctggtgggggagagcatggcgagtctggctacggaggtggcaaaggaggtggagctggaggaggctatggtggt 12812739  T

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Target: chr5; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 33 - 107
Target Start/End: Original strand, 12749573 - 12749647
Alignment:
Q  33 gctggtgggggagagcatggcgagtctggctatggaggtggcaaaggaggtggagctggaggaggctatggtggt 107  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  12749573 gctggtgggggagagcatggcgagtctggctacggaggtggcaaaggaggtggagctggaggaggttatggtggt 12749647  T

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Target: chr5; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 12749629 - 12749716
Alignment:
Q  20 tggaggaggttacgctggtgggggagagcatggcgagtctggctatggaggtggcaaaggaggtggagctggaggaggctatggtggt 107  Q
    |||||||||||| | |||||||| ||||||||| |  |||||||| ||||||||  ||||||||||||||||||||||||||||||||    
T  12749629 tggaggaggttatggtggtggggtagagcatggtgcttctggctacggaggtggtgaaggaggtggagctggaggaggctatggtggt 12749716  T

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Target: chr5; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 12812721 - 12812808
Alignment:
Q  20 tggaggaggttacgctggtgggggagagcatggcgagtctggctatggaggtggcaaaggaggtggagctggaggaggctatggtggt 107  Q
    ||||||||| || | |||||||||||||||||| |  |||||||| ||||||||  ||||||||||||||||||||||||||||||||    
T  12812721 tggaggaggctatggtggtgggggagagcatggtgcttctggctacggaggtggtgaaggaggtggagctggaggaggctatggtggt 12812808  T

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Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 12812583 - 12812660
Alignment:
Q  20 tggaggaggttacgctggtgggggagagcatggcgagtctggctatggaggtggcaaaggaggtggagctggaggagg 97  Q
    |||||||||||| | |||||||||||||||||| || |||||||||||||||||  |||||||||| |||||||||||    
T  12812583 tggaggaggttatggtggtgggggagagcatggtgattctggctatggaggtggtgaaggaggtggggctggaggagg 12812660  T

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Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 12749491 - 12749556
Alignment:
Q  20 tggaggaggttacgctggtgggggagagcatggcgagtctggctatggaggtggcaaaggaggtgg 85  Q
    |||||||||||| | |||||||||||||||||| || |||||||||||||| ||  ||||||||||    
T  12749491 tggaggaggttatggtggtgggggagagcatggtgattctggctatggaggcggtgaaggaggtgg 12749556  T

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