View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19753_low_7 (Length: 288)
Name: NF19753_low_7
Description: NF19753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19753_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 161; Significance: 7e-86; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 638526 - 638270
Alignment:
| Q |
1 |
tccctcttcccaaaaattatcaacgcgctcnnnnnnnncagtctccc-cccannnnnnnaccctctcttttctcacaaatcaacaaaacacaactccctt |
99 |
Q |
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| T |
638526 |
tccctcttcccaaaaattatcaacgcgctcttttttt-cagtctccctcccatttttttaccctctcttttctcacaaatcaacaaaacacaactccctt |
638428 |
T |
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| Q |
100 |
tcctcaaaaaccctttcctcttttctttctctccctcccattctctttcacaattcatttccctatttccggaaaactgaaacgcttttctctcaccaaa |
199 |
Q |
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| T |
638427 |
tcctc---------------ttttctttctctccctcccattctctttcacaattcatttccctatttccggaaaactgaaacgctcttctctcaccaaa |
638343 |
T |
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| Q |
200 |
ctccatcgaacccaatccgtagaaccagaactcgttgaaatcgtcgtcatctcaccagaacccgtcaaactct |
272 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
638342 |
ctccatcgaacccaatccgtagaaccagaactcgttgaaatcgtcgtcatctcaccagaacccgtcaaactct |
638270 |
T |
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Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 117 - 270
Target Start/End: Complemental strand, 36392991 - 36392838
Alignment:
| Q |
117 |
ctcttttctttctctccctcccattctctttcacaattcatttccctatttccggaaaactgaaacgcttttctctcaccaaactccatcgaacccaatc |
216 |
Q |
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| T |
36392991 |
ctcttttctttctctccctcccatcctctttcacaattcatttccctctttctggaaaactgaaacgaccttctctcaccaaactccatccaaaccaatc |
36392892 |
T |
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| Q |
217 |
cgtagaaccagaactcgttgaaatcgtcgtcatctcaccagaacccgtcaaact |
270 |
Q |
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| T |
36392891 |
catagaaccagaactctttgaaatcgtcgtcgtctcaccagaacccgtcaaact |
36392838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 180
Target Start/End: Original strand, 36227631 - 36227725
Alignment:
| Q |
92 |
actccctttcctcaaaaaccctttcctcttttcttt------ctctccctcccattctctttcacaattcatttccctatttccggaaaactgaa |
180 |
Q |
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||||||| ||||||||| || ||||||||||||||| ||||||||| ||||||||||||||||||||||| || ||||| ||||| |||| |
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| T |
36227631 |
actccctctcctcaaaagccatttcctcttttctttctctccctctccctctcattctctttcacaattcatttctctctttcctgaaaaatgaa |
36227725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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