View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19753_low_8 (Length: 285)
Name: NF19753_low_8
Description: NF19753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19753_low_8 |
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| [»] scaffold0021 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 2 - 274
Target Start/End: Original strand, 37263443 - 37263714
Alignment:
| Q |
2 |
aaatactaataataattgtaaagagctacaaagaagaaacaatagaaaaactaatcgaaatactaagaataataattggagttgtgatgtgaaatattgt |
101 |
Q |
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| T |
37263443 |
aaatattaataataattgtaaagggctacaaagaagaaacaatagacaagctaatcgaaatactaagaataataattggagttgtgatgtgaaattttgt |
37263542 |
T |
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| Q |
102 |
taacccatatgtataatttatagacctatttcataggataatttggtaaaataaccataattgttttcaatattcttgaaaatacaatnnnnnnncagaa |
201 |
Q |
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| T |
37263543 |
taacccatatgtataatttatagacatatttcataggataatttggtaaaataaccataattgttttcaatattcttgaaaatacaat-aaaaaacataa |
37263641 |
T |
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| Q |
202 |
gatcatttgagtatcatttttatttgataattaaaataatcatttaataaattaattttggctcattattctt |
274 |
Q |
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| T |
37263642 |
gatcatttgagtatcatttttatttggcaattaaaataatcatttaataaattaattttggctcattattctt |
37263714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 37263401 - 37263458
Alignment:
| Q |
17 |
ttgtaaagagctacaaagaagaaacaatagaaaaactaatcgaaatactaagaataat |
74 |
Q |
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| T |
37263401 |
ttgtaaagaactacaaagaagaaacaatagaaaaactaatcgaaatattaataataat |
37263458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 79 - 156
Target Start/End: Complemental strand, 130332 - 130256
Alignment:
| Q |
79 |
ggagttgtgatgtgaaatattgttaacccatatgtataatttatagacctatttcataggataatttggtaaaataac |
156 |
Q |
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| T |
130332 |
ggagttgtgatgtgagatgatgttaacc-atatgtctaatttatagacatatttcttagggtaatttggtaaaataac |
130256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 156
Target Start/End: Complemental strand, 36721432 - 36721359
Alignment:
| Q |
79 |
ggagttgtgatgtgaaatattgttaacccatatgtataatttatagacctatttcataggataatttggtaaaataac |
156 |
Q |
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| T |
36721432 |
ggagttgtgatgtgag---ttgttaacc-atatgtctaatttatagacatatttcatagggtagtttggtaaaataac |
36721359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 155
Target Start/End: Original strand, 27345325 - 27345400
Alignment:
| Q |
79 |
ggagttgtgatgtgaaatattgttaacccatatgtataatttatagacctatttcataggataatttggtaaaataa |
155 |
Q |
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| T |
27345325 |
ggagttgtgatgtgagatgatgttaacc-atatgtctaatttatagacatttttcttaaggtaatttggtaaaataa |
27345400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 156
Target Start/End: Complemental strand, 13237346 - 13237270
Alignment:
| Q |
79 |
ggagttgtgatgtgaaatattgttaacccatatgtataatttatagacctatttcataggataatttggtaaaataac |
156 |
Q |
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| T |
13237346 |
ggagttgtgatgtgagatgatgttgacc-atatgtctaatttatagacatttttcttaaggtaatttggtaaaataac |
13237270 |
T |
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