View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19754_high_1_N (Length: 463)
Name: NF19754_high_1_N
Description: NF19754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19754_high_1_N |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 212 - 451
Target Start/End: Original strand, 12646345 - 12646584
Alignment:
| Q |
212 |
ttcacctacctgtgcatgatctgcattaaaaggtggaatacccacaagaagctcgtaaagtatgacacccacagaccaccaatctgcagttgtacctaca |
311 |
Q |
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| T |
12646345 |
ttcacctacctgtgcatgatctgcattaaaaggtggaatacccacaagaagctcgtaaagtatgacacccacagaccaccaatctgcagttgtacctaca |
12646444 |
T |
|
| Q |
312 |
gaagtgcaaacgtatataagaatgtattgaaaattaaaagaaattagaacgaaaaactaaatttagttatttatttttgataagatgttactacagacca |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12646445 |
gaagtgcaaacgtatataagaatgtattgaaaattaaaagaaattagaacgaaaaactaaatttagttatttatttttgataagatgttactacagacca |
12646544 |
T |
|
| Q |
412 |
tgtcccatgcccaaaagtatttcgggtgccaaataatctg |
451 |
Q |
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| T |
12646545 |
tgtcccatgcccaaaagtatttcgggtgccaaataatctg |
12646584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 12646134 - 12646293
Alignment:
| Q |
1 |
tgaacatccactttatcatccaatgtgagattcttactcacacgtgaaaatactaacattaatcgttagaatcgactctgcaacttggattgggattgcc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
12646134 |
tgaacatccactttatcatccaatgtgagattcttactcacacttgaaaatactaacattaatcgttagaatcgactctgcaacttggattgggattgtc |
12646233 |
T |
|
| Q |
101 |
cctaatagtttgtaataaacattgatttcgcatttgaacgaatttgtttaccgtcaacag |
160 |
Q |
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|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
12646234 |
cctaatagtttgtaataaacattgattttgtatttgaacgaatttgtttaccgtcaacag |
12646293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 212 - 451
Target Start/End: Complemental strand, 29205530 - 29205291
Alignment:
| Q |
212 |
ttcacctacctgtgcatgatctgcattaaaaggtggaatacccacaagaagctcgtaaagtatgacacccacagaccaccaatctgcagttgtacctaca |
311 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29205530 |
ttcacatacctgtgcatgatctgcattaaaaggtggaatacccacaagaagctcgtaaagtatgacacccacagaccaccaatctgcagttgtacctaca |
29205431 |
T |
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| Q |
312 |
gaagtgcaaacgtatataagaatgtattgaaaattaaaagaaattagaacgaaaaactaaatttagttatttatttttgataagatgttactacagacca |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29205430 |
gaagtgcaaacgtatataagaatgtattgaaaattaaaagaaattagaacgaaaaactaaatttagttatttatttttgataagatgttactacagacca |
29205331 |
T |
|
| Q |
412 |
tgtcccatgcccaaaagtatttcgggtgccaaataatctg |
451 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
29205330 |
tgtcccatgcccaaaagtatttcgggtgccaaataatctg |
29205291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 29205741 - 29205582
Alignment:
| Q |
1 |
tgaacatccactttatcatccaatgtgagattcttactcacacgtgaaaatactaacattaatcgttagaatcgactctgcaacttggattgggattgcc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29205741 |
tgaacatccactttatcatccaatgtgagattcttactcacacgtgaaaatactaacattaatcgttagaatcgactctgcaacttggattgggattgcc |
29205642 |
T |
|
| Q |
101 |
cctaatagtttgtaataaacattgatttcgcatttgaacgaatttgtttaccgtcaacag |
160 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29205641 |
cctaatagtttgtaataaacattgatttcgcatttgaacgaatttgtttaccgtcaacag |
29205582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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