View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19754_high_2 (Length: 408)

Name: NF19754_high_2
Description: NF19754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19754_high_2
NF19754_high_2
[»] chr5 (3 HSPs)
chr5 (16-177)||(43194044-43194205)
chr5 (301-379)||(43194323-43194401)
chr5 (301-373)||(43194495-43194567)


Alignment Details
Target: chr5 (Bit Score: 111; Significance: 7e-56; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 16 - 177
Target Start/End: Original strand, 43194044 - 43194205
Alignment:
Q  16 catcatcaacaccaagaaccaaatcaaatatcaattnnnnnnnnnnnnntaattttaataacatcaaatatttaacaaacttcagtttagatataatcat 115  Q
    |||||| |||||||||||||||||||||| ||||||             |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  43194044 catcattaacaccaagaaccaaatcaaatctcaattaaaaaaataaaaataattttaataacatcaaatatttaacagacttcagtttagatataatcat 43194143  T
Q  116 tggttaggtcatcaaccgattcaatctcacacttaaaacacaatgtaactgaaaatcacatg 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43194144 tggttaggtcatcaaccgattcaatctcacacttaaaacacaatgtaactgaaaatcacatg 43194205  T

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Target: chr5; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 301 - 379
Target Start/End: Original strand, 43194323 - 43194401
Alignment:
Q  301 aagttaagattgaaccgttcaggtaacctaaccaaaacaaactaagttaagtcacctgaacgattcaatctcaaaatac 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43194323 aagttaagattgaaccgttcaggtaacctaaccaaaacaaactaagttaagtcacctgaacgattcaatctcaaaatac 43194401  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 301 - 373
Target Start/End: Original strand, 43194495 - 43194567
Alignment:
Q  301 aagttaagattgaaccgttcaggtaacctaaccaaaacaaactaagttaagtcacctgaacgattcaatctca 373  Q
    |||| ||||||||| ||||||| ||||||||||||||||||||   ||| |||| | ||||||||||||||||    
T  43194495 aagtcaagattgaatcgttcagataacctaaccaaaacaaactcgattaggtcatcagaacgattcaatctca 43194567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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