View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19754_high_4 (Length: 360)
Name: NF19754_high_4
Description: NF19754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19754_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 46806140 - 46805789
Alignment:
| Q |
1 |
ccttcttgctttaactttgattccatataaacagttaatttagctttcaaatcaagcagcaaaccagaggctgcttccagtttagatttgagatcctttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46806140 |
ccttcttgctttaactttgattccatataaacagttaatttagctttcaaatcaagcagcaaaccagaggctgcttccagtttagatttgagatcctttg |
46806041 |
T |
|
| Q |
101 |
cagacaacatttgctcattgattctctggagctcttcttctgcctgtttaagttccttctcccaattgagtgaatcttgatctcttgccatgactgttcc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46806040 |
cagacaacatttgctcattgattctctggagctcttcttctgcctgtttaagttccttctcccaattgagtgaatcttgatctcttgccatgactgttcc |
46805941 |
T |
|
| Q |
201 |
tattctttgttcctctgcttccaagtgtgcagcatgagcagtctctaatgactcttttgtggctattagttcaatagttaaatcttccactgacttctct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46805940 |
tattctttgttcctctgcttccaagtgtgcagcatgagcagtctctaatgactcttttgtggctattagttcaatagttaaatcttccactgacttctct |
46805841 |
T |
|
| Q |
301 |
acttccttggatgctgtaactgcctcctcggctttcttaatagcttcatctc |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46805840 |
acttccttggatgctgtaactgcctcctcggctttcttaatagcttcatctc |
46805789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 5888742 - 5889088
Alignment:
| Q |
1 |
ccttcttgctttaactttgattccatataaacagttaatttagctttcaaatcaagcagcaaaccagaggctgcttcca-gtttagatttgagatccttt |
99 |
Q |
| |
|
|||||||| ||| |||||||||||||||| || |||| | ||||||||||||||| ||||| |||| ||| | | | |||||||||| |||||| | |
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| T |
5888742 |
ccttcttggtttgactttgattccatataggcatttaactcagctttcaaatcaagaagcaacgcagaagctt-tactatgtttagatttaagatccata |
5888840 |
T |
|
| Q |
100 |
gcagacaacatttgctcattgattctctggagctcttcttctgcctgtttaagttccttctcccaattgagtgaatcttgatctcttgccatgactgttc |
199 |
Q |
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||| |||| |||| | ||||| | | | || |||| |||| | ||||| |||||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5888841 |
gcaaacaaaattttttgattgagtttttctagttcttgttcttcttgttttagttccctctcccaattgagagaatcttgatctcttgccatgactgttc |
5888940 |
T |
|
| Q |
200 |
ctattctttgttcctctgcttccaagtgtgcagcatgagcagtctctaatgactcttttgtggctattagttcaatagttaaatcttccactgacttctc |
299 |
Q |
| |
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||||||| ||||| |||||||||| ||||||| ||| || | || || |||||||||||||| || | |||||||| |||||||| || | ||| || |
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| T |
5888941 |
ctattctgtgttcttctgcttccatatgtgcagaatgtgctgattccaaagactcttttgtggcaatcaactcaatagtcaaatcttcaaccgtcttttc |
5889040 |
T |
|
| Q |
300 |
tacttccttggatgctgtaactgcctcctcggctttcttaatagcttc |
347 |
Q |
| |
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||||| ||| ||||| | ||| || || |||||||| | ||||||||| |
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|
| T |
5889041 |
tacttgcttcgatgcagcaacagcatcttcggctttgtcaatagcttc |
5889088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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