View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19754_high_5 (Length: 351)
Name: NF19754_high_5
Description: NF19754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19754_high_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 14 - 351
Target Start/End: Original strand, 54847668 - 54848022
Alignment:
| Q |
14 |
agggaggctcattgcatatatttttatt---catctgaaattagtagtctcttgaatgattgagagtaagtgtagacaaggatgcggtgataacatacaa |
110 |
Q |
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| T |
54847668 |
agggaggctcattgcatatatttttattattcatctgaaattagtagtctcttgaatgattgagagaaagtgtagacaaggatgcggtgataacatacaa |
54847767 |
T |
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| Q |
111 |
ctcttttacc----------------atatttaattattgaatctaaatccaatccaatccaatcattttcttaagtaacggaatgtgcctctcatacca |
194 |
Q |
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| T |
54847768 |
ctcttttacctataaacaccattcccatatttaattattgaatctaaatccaatccaatccaatcattttcttaagtaacg-aatgtgcctctcatacca |
54847866 |
T |
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| Q |
195 |
taattttatatttagttgattcaccagcttcccatatataatcaacagtaaagaaactcaatatcacaaattcataatcaacattttttaacaattgtat |
294 |
Q |
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| T |
54847867 |
taattttatatttagttgattcaccagcttcccatatataatcaacagtaaagaaactcaatatcacaaattcataatcaaca-tttttaacaattgtat |
54847965 |
T |
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| Q |
295 |
tttataatttttctcttaagctgaacaaatggaacaagaaatcgaaaacatgatatt |
351 |
Q |
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| T |
54847966 |
tttataatttttctcttaagctgaacaaatggaagaagaaatcgaaaacatgatatt |
54848022 |
T |
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