View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19754_low_1 (Length: 395)

Name: NF19754_low_1
Description: NF19754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19754_low_1
NF19754_low_1
[»] chr8 (4 HSPs)
chr8 (1-108)||(39625701-39625805)
chr8 (1-108)||(39635251-39635355)
chr8 (76-183)||(39628064-39628171)
chr8 (76-183)||(39637614-39637721)
[»] chr7 (7 HSPs)
chr7 (285-387)||(11668211-11668315)
chr7 (188-255)||(11668803-11668873)
chr7 (193-255)||(11668446-11668511)
chr7 (200-255)||(8648888-8648946)
chr7 (295-368)||(39616949-39617024)
chr7 (189-244)||(15090393-15090451)
chr7 (282-368)||(8648661-8648749)
[»] chr5 (6 HSPs)
chr5 (188-255)||(10731440-10731510)
chr5 (313-387)||(10731609-10731684)
chr5 (313-368)||(16364341-16364398)
chr5 (313-348)||(29384964-29384999)
chr5 (213-255)||(16364750-16364792)
chr5 (286-387)||(11991044-11991147)
[»] chr3 (5 HSPs)
chr3 (193-251)||(18194492-18194553)
chr3 (188-251)||(47257216-47257282)
chr3 (295-379)||(40243867-40243953)
chr3 (319-387)||(27080172-27080242)
chr3 (188-257)||(2063580-2063652)
[»] chr4 (4 HSPs)
chr4 (313-387)||(54851899-54851975)
chr4 (313-387)||(54854480-54854556)
chr4 (313-380)||(54852332-54852401)
chr4 (314-387)||(54853896-54853971)
[»] chr2 (2 HSPs)
chr2 (320-385)||(34323585-34323652)
chr2 (313-385)||(16642056-16642129)
[»] chr6 (1 HSPs)
chr6 (310-348)||(30122934-30122972)


Alignment Details
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 39625701 - 39625805
Alignment:
Q  1 aacttctttttccctatatttttgtaatccgtttagtttgatgcatataagagataaaattccgccaaattcggtattttgtaactgaatacgtcttttt 100  Q
    ||||||||||| |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39625701 aacttcttttttcctatatttttgtaatccgtttagtttgatg---ataagagataaaattccgccaaattcggtattttgtaactgaatacgtcttttt 39625797  T
Q  101 ggtggaat 108  Q
    ||||||||    
T  39625798 ggtggaat 39625805  T

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Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 39635251 - 39635355
Alignment:
Q  1 aacttctttttccctatatttttgtaatccgtttagtttgatgcatataagagataaaattccgccaaattcggtattttgtaactgaatacgtcttttt 100  Q
    ||||||||||| |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39635251 aacttcttttttcctatatttttgtaatccgtttagtttgatg---ataagagataaaattccgccaaattcggtattttgtaactgaatacgtcttttt 39635347  T
Q  101 ggtggaat 108  Q
    ||||||||    
T  39635348 ggtggaat 39635355  T

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Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 76 - 183
Target Start/End: Original strand, 39628064 - 39628171
Alignment:
Q  76 attttgtaactgaatacgtct-ttttggtggaataatagtaacagattagtgaaatagaat-aactattattttctcccatctatttatttctcggacgt 173  Q
    ||||||||||||||||  ||| |||| |||||||||| ||||||||||||||||||||||| |||||||||||  |||||||||| ||||| |||  |||    
T  39628064 attttgtaactgaatatttctctttttgtggaataatcgtaacagattagtgaaatagaataaactattattt--tcccatctatctatttttcgcgcgt 39628161  T
Q  174 tctatttttt 183  Q
    ||||||||||    
T  39628162 tctatttttt 39628171  T

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Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 76 - 183
Target Start/End: Original strand, 39637614 - 39637721
Alignment:
Q  76 attttgtaactgaatacgtct-ttttggtggaataatagtaacagattagtgaaatagaat-aactattattttctcccatctatttatttctcggacgt 173  Q
    ||||||||||||||||  ||| |||| |||||||||| ||||||||||||||||||||||| |||||||||||  |||||||||| ||||| |||  |||    
T  39637614 attttgtaactgaatatttctctttttgtggaataatcgtaacagattagtgaaatagaataaactattattt--tcccatctatctatttttcgcgcgt 39637711  T
Q  174 tctatttttt 183  Q
    ||||||||||    
T  39637712 tctatttttt 39637721  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 285 - 387
Target Start/End: Original strand, 11668211 - 11668315
Alignment:
Q  285 atctatcatataattatgaagtttgatatctactaaaaatacaatcttaccccttcttaatttt--gacaagttatcaaaattataatcttttgtgtcct 382  Q
    |||||| || ||||||||||  || || ||||| ||||||||||||||||||||||||||||||  |||| || ||||||||||||  |||||||||| |    
T  11668211 atctattatctaattatgaaacttaatgtctaccaaaaatacaatcttaccccttcttaatttttagacacgtcatcaaaattatatccttttgtgtcat 11668310  T
Q  383 ttgct 387  Q
    |||||    
T  11668311 ttgct 11668315  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 188 - 255
Target Start/End: Original strand, 11668803 - 11668873
Alignment:
Q  188 taattttaatctcaatcaaaacaaatt---ttataattcaacttctaaatatctaaagagttcaaaacaat 255  Q
    |||||||||||||||||||||||||||   |||||||||| ||||||||||| ||||||||| ||||||||    
T  11668803 taattttaatctcaatcaaaacaaattttcttataattcatcttctaaatatttaaagagttaaaaacaat 11668873  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 11668446 - 11668511
Alignment:
Q  193 ttaatctcaatcaaaacaaatttt---ataattcaacttctaaatatctaaagagttcaaaacaat 255  Q
    ||||||||||||||||||||||||   |||||||||||| ||||||||||||||||| ||||||||    
T  11668446 ttaatctcaatcaaaacaaattttcctataattcaacttttaaatatctaaagagttaaaaacaat 11668511  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 200 - 255
Target Start/End: Original strand, 8648888 - 8648946
Alignment:
Q  200 caatcaaaacaaatttt---ataattcaacttctaaatatctaaagagttcaaaacaat 255  Q
    |||||||||||||||||   |||||||||||||||| ||||||||||||| ||||||||    
T  8648888 caatcaaaacaaattttcctataattcaacttctaattatctaaagagtttaaaacaat 8648946  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 295 - 368
Target Start/End: Original strand, 39616949 - 39617024
Alignment:
Q  295 taattatgaagtttgatatctactaaaaatacaatcttaccccttcttaa--ttttgacaagttatcaaaattata 368  Q
    |||||||||| ||| || ||||| ||||||||| ||||||||||||||||  |||||||| || ||||||||||||    
T  39616949 taattatgaaatttaatgtctaccaaaaatacagtcttaccccttcttaattttttgacatgtcatcaaaattata 39617024  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 244
Target Start/End: Complemental strand, 15090451 - 15090393
Alignment:
Q  189 aattttaatctcaatcaaaacaaattt---tataattcaacttctaaatatctaaagag 244  Q
    |||||||||| ||||||||||||||||   |||| || |||||||||||||||||||||    
T  15090451 aattttaatcccaatcaaaacaaatttttctatattttaacttctaaatatctaaagag 15090393  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 368
Target Start/End: Original strand, 8648661 - 8648749
Alignment:
Q  282 tctatctatcatataattatgaagtttgatatctactaaaaatacaatcttaccccttctta--attttgacaagttatcaaaattata 368  Q
    |||||||||  ||||||||||||  || |||| |||  |||||||||||||| ||||||| |  ||||||||| || ||||||||||||    
T  8648661 tctatctattctataattatgaaacttaatatttaccgaaaatacaatcttatcccttctaaatattttgacacgtcatcaaaattata 8648749  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 188 - 255
Target Start/End: Complemental strand, 10731510 - 10731440
Alignment:
Q  188 taattttaatctcaatcaaaacaaatttt---ataattcaacttctaaatatctaaagagttcaaaacaat 255  Q
    |||| |||||| |||||||||||||||||   |||||||||||||||||||||||||||||| ||||||||    
T  10731510 taatcttaatcccaatcaaaacaaattttcctataattcaacttctaaatatctaaagagttaaaaacaat 10731440  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 313 - 387
Target Start/End: Complemental strand, 10731684 - 10731609
Alignment:
Q  313 tctactaaaaatacaatcttaccccttcttaa--ttttgacaagttatcaaaattataatcttttgtgtcctttgct 387  Q
    |||| |||||||||||||||||| ||||||||  |||||||| || ||||||||||| |||||||||||| ||||||    
T  10731684 tctattaaaaatacaatcttacctcttcttaattttttgacacgtcatcaaaattat-atcttttgtgtcttttgct 10731609  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 368
Target Start/End: Original strand, 16364341 - 16364398
Alignment:
Q  313 tctactaaaaatacaatcttaccccttcttaa--ttttgacaagttatcaaaattata 368  Q
    ||||| ||||||||||||||||||||||||||  |||||||| || ||||||||||||    
T  16364341 tctaccaaaaatacaatcttaccccttcttaattttttgacacgtcatcaaaattata 16364398  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 313 - 348
Target Start/End: Original strand, 29384964 - 29384999
Alignment:
Q  313 tctactaaaaatacaatcttaccccttcttaatttt 348  Q
    ||||| ||||||||||||||||||||||||||||||    
T  29384964 tctaccaaaaatacaatcttaccccttcttaatttt 29384999  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 255
Target Start/End: Original strand, 16364750 - 16364792
Alignment:
Q  213 ttttataattcaacttctaaatatctaaagagttcaaaacaat 255  Q
    |||||||||||||||||||||||  ||||||||| ||||||||    
T  16364750 ttttataattcaacttctaaatagttaaagagttaaaaacaat 16364792  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 387
Target Start/End: Original strand, 11991044 - 11991147
Alignment:
Q  286 tctatcatataattatgaagtttgatatctactaaaaatacaatcttaccccttcttaa--ttttgacaagttatcaaaattataatcttttgtgtcctt 383  Q
    |||||||| ||||||| ||  || || ||||| ||||||| ||||||||||||||| ||  ||||||||  |||| |||| ||||  |||||||||| ||    
T  11991044 tctatcatctaattataaaacttaatgtctacgaaaaatataatcttaccccttctgaattttttgacatattataaaaaatatatccttttgtgtcttt 11991143  T
Q  384 tgct 387  Q
    ||||    
T  11991144 tgct 11991147  T

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Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 193 - 251
Target Start/End: Complemental strand, 18194553 - 18194492
Alignment:
Q  193 ttaatctcaatcaaaacaaatttt---ataattcaacttctaaatatctaaagagttcaaaa 251  Q
    ||||||||||||||||||||||||   |||||||||||||||||||||||||||||| ||||    
T  18194553 ttaatctcaatcaaaacaaattttcatataattcaacttctaaatatctaaagagttaaaaa 18194492  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 188 - 251
Target Start/End: Complemental strand, 47257282 - 47257216
Alignment:
Q  188 taattttaatctcaatcaaaacaaatttt---ataattcaacttctaaatatctaaagagttcaaaa 251  Q
    |||| ||||||||||| || |||||||||   |||||||||||||||||||||||||||||| ||||    
T  47257282 taatcttaatctcaatgaatacaaatttttcgataattcaacttctaaatatctaaagagttaaaaa 47257216  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 295 - 379
Target Start/End: Original strand, 40243867 - 40243953
Alignment:
Q  295 taattatgaagtttgatatctactaaaaatacaatcttaccccttcttaa--ttttgacaagttatcaaaattataatcttttgtgt 379  Q
    ||||||||||  || || ||||| ||||||| ||||||||||||| ||||  |||||||| || |||||||||||| ||||||||||    
T  40243867 taattatgaaacttaatttctaccaaaaataaaatcttaccccttattaattttttgacacgtcatcaaaattatattcttttgtgt 40243953  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 387
Target Start/End: Original strand, 27080172 - 27080242
Alignment:
Q  319 aaaaatacaatcttaccccttcttaa--ttttgacaagttatcaaaattataatcttttgtgtcctttgct 387  Q
    ||||||||||| ||||||||||||||  |||||||| || |||||||||||   |||||||||| ||||||    
T  27080172 aaaaatacaatattaccccttcttaatcttttgacacgtcatcaaaattatttccttttgtgtcttttgct 27080242  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 257
Target Start/End: Original strand, 2063580 - 2063652
Alignment:
Q  188 taattttaatctcaatcaaaacaaatttt---ataattcaacttctaaatatctaaagagttcaaaacaatct 257  Q
    |||||||||||  ||||||||||||||||   ||||||  |||||||||||| |||||| || ||||||||||    
T  2063580 taattttaatcctaatcaaaacaaatttttctataatttcacttctaaatatgtaaagatttaaaaacaatct 2063652  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 313 - 387
Target Start/End: Complemental strand, 54851975 - 54851899
Alignment:
Q  313 tctactaaaaatacaatcttaccccttctta--attttgacaagttatcaaaattataatcttttgtgtcctttgct 387  Q
    ||||| |||||||||||||||||||||||||  ||||||||| || ||||||||||||  |||||||||| ||||||    
T  54851975 tctaccaaaaatacaatcttaccccttcttaatattttgacacgtcatcaaaattatatccttttgtgtcttttgct 54851899  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 313 - 387
Target Start/End: Complemental strand, 54854556 - 54854480
Alignment:
Q  313 tctactaaaaatacaatcttaccccttctta--attttgacaagttatcaaaattataatcttttgtgtcctttgct 387  Q
    ||||| |||||||||||||||||||||||||  ||||||||  |||||||||||||||  ||||||| || ||||||    
T  54854556 tctaccaaaaatacaatcttaccccttcttagtattttgacgcgttatcaaaattatatccttttgtatcttttgct 54854480  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 380
Target Start/End: Complemental strand, 54852401 - 54852332
Alignment:
Q  313 tctactaaaaatacaatcttaccccttctta--attttgacaagttatcaaaattataatcttttgtgtc 380  Q
    ||||| ||||||||||||||| |||||||||  ||||||||| || || |||||||||  ||||||||||    
T  54852401 tctaccaaaaatacaatcttaacccttcttaatattttgacacgtcattaaaattatatccttttgtgtc 54852332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 387
Target Start/End: Complemental strand, 54853971 - 54853896
Alignment:
Q  314 ctactaaaaatacaatcttaccccttcttaat--tttgacaagttatcaaaattataatcttttgtgtcctttgct 387  Q
    |||| ||||||||||||||| ||||| |||||  ||||||| || ||||||||||||   ||||||||| ||||||    
T  54853971 ctacaaaaaatacaatcttatccctttttaatattttgacacgtcatcaaaattatatcattttgtgtcttttgct 54853896  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 320 - 385
Target Start/End: Complemental strand, 34323652 - 34323585
Alignment:
Q  320 aaaatacaatcttaccccttcttaa--ttttgacaagttatcaaaattataatcttttgtgtcctttg 385  Q
    |||||||||||||||||||||||||  ||||||||||| ||||||||||||   ||||||||| ||||    
T  34323652 aaaatacaatcttaccccttcttaattttttgacaagtcatcaaaattatatctttttgtgtcttttg 34323585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 313 - 385
Target Start/End: Complemental strand, 16642129 - 16642056
Alignment:
Q  313 tctactaaaaatacaatcttaccccttcttaa--ttttgacaagttatcaaaattataatcttttgtgtcctttg 385  Q
    ||||| ||||||||||||||||||||||||||  ||||||||| ||||||||||||||  |||||| ||| ||||    
T  16642129 tctaccaaaaatacaatcttaccccttcttaattttttgacaa-ttatcaaaattatatccttttgcgtcttttg 16642056  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 348
Target Start/End: Original strand, 30122934 - 30122972
Alignment:
Q  310 atatctactaaaaatacaatcttaccccttcttaatttt 348  Q
    |||||||| ||||||| ||||||||||||||||||||||    
T  30122934 atatctaccaaaaatataatcttaccccttcttaatttt 30122972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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