View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19755_high_11 (Length: 538)
Name: NF19755_high_11
Description: NF19755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19755_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 1 - 522
Target Start/End: Original strand, 22951346 - 22951865
Alignment:
| Q |
1 |
actcaattaatcacaatgattttgcattgtgtgacatatgcattcagtgtgatttgtatcaccgatataaacaacatagtgccttctattcatgtggaaa |
100 |
Q |
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| T |
22951346 |
actcaattaatcacaatgattttgcattgtgtgacatatgcattcagtgtgatttgtatcaccgatataaacaacatagtgccttctattcatgtggaaa |
22951445 |
T |
|
| Q |
101 |
gttatggtgaacacaaaattatagttttaaatgtctatacttgttatgtnnnnnnngaaactaagggaatgccattgaaagcgccttttttaactatttc |
200 |
Q |
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| T |
22951446 |
gttatggtgaacacaaaattatagttttaaatgtctatacttgttatgtaaaaaaagaaactaagggaatgccattgaaagcgccttttttaactatttt |
22951545 |
T |
|
| Q |
201 |
atttctgtgtataccatagttggttgtatacgttcgttctattctcagttgtgaaatatattttgtttcatcaggcatatggttaatcattttatcgggt |
300 |
Q |
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| T |
22951546 |
atttctgtgtataccatagttggttgtatacgttcgttctattctcagttgtgaaatatattttgtttcatcaggcatatggttaatcattttatcgggt |
22951645 |
T |
|
| Q |
301 |
cctaattttaaattattacttcaaacactatacatcatttttatgatatatttcaactttgtttttcaaatcctgaatcttactatcctgcacaatttat |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
22951646 |
cctaattttaaattattacttcaaacactatacatcatttttatgatatatttcaac--tgtttttcaaatcctgaatcttactatcctgcacaatttat |
22951743 |
T |
|
| Q |
401 |
gattcaaaagttggtttgatgatatccgaattgaacggcaatatcaataaattccgagatattctatgattgcatgttttgaatagtatctcacctgcga |
500 |
Q |
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| T |
22951744 |
gattcaaaagttggtttgatgatatccgaattgaacggcaatatcaataaattccgagatattctatgattgcatgttttgaatagtatctcacctgcga |
22951843 |
T |
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| Q |
501 |
ggtatgtgaaggtcttcccatt |
522 |
Q |
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|||||||||||||||||||||| |
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| T |
22951844 |
ggtatgtgaaggtcttcccatt |
22951865 |
T |
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