View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19755_high_13 (Length: 497)
Name: NF19755_high_13
Description: NF19755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19755_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 261 - 480
Target Start/End: Complemental strand, 11517396 - 11517177
Alignment:
| Q |
261 |
tttactggtagcttaccttggtaacgtaatccatctcaatgaattggaaatgaaagccaacactaccaaaaaggggagctacaaaagaacatgcacggga |
360 |
Q |
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| T |
11517396 |
tttactggtagcttaccttggtaacgtaatccatctcaatgaactggaaatgaaagccaacactaccaaaaaggggagctacaaaagaacatgcacggga |
11517297 |
T |
|
| Q |
361 |
aaaagcagcaacctcgatcatattttcgttgacgatggcatttgctagctctttgaatgcatctgcgattttagcgagatgcttttcatcgactgctgtc |
460 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11517296 |
aaaagcagcaacctcgatcatattttcgttgacgatggcatttgctagctctttgaatgcatctgcgattttagcgagatgcttttcatcgactgctgtc |
11517197 |
T |
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| Q |
461 |
gtggaagccactcttcttcc |
480 |
Q |
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|||||||||||||||||||| |
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| T |
11517196 |
gtggaagccactcttcttcc |
11517177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 11517625 - 11517425
Alignment:
| Q |
20 |
caagtatgtatgc-ttaccaacactttcagattaaatacttatttggtatgtgtgtttgtgtttaacattgacacaacactgacacatatacatatggtt |
118 |
Q |
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||||||||||||| |||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11517625 |
caagtatgtatgcgttaccaacactt-cagattaaagacgtatttggtatgtgtgtttgtgtttaacattgacacaacactgacacatatacatatggtt |
11517527 |
T |
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| Q |
119 |
gtaattaatctatttcatctttttaaattattactgtgtccggcgtacatgtatgagtaagtgtatatctcaacaaataagatcacatattcacatacat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
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| T |
11517526 |
ataattaatctatttcatctttttaaattattactgt---cggcgtacatgtatgagtaagtgtatatatcaacaaataagatcccatattcacatacat |
11517430 |
T |
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| Q |
219 |
gttac |
223 |
Q |
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||||| |
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| T |
11517429 |
gttac |
11517425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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