View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19755_high_14 (Length: 491)
Name: NF19755_high_14
Description: NF19755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19755_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 16 - 470
Target Start/End: Original strand, 4045686 - 4046141
Alignment:
| Q |
16 |
atgggtaatgaatgtatgggttgagttaggactagtagcacttaaaaagccaagattgatgccaataataatcaccttaactatctcttttcaacactca |
115 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4045686 |
atgggtaatgaatgtacgggttgagttaggactagtagcacttaaaaagccaagattgatgccaataataattaccttaactatctcttttcaacactca |
4045785 |
T |
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| Q |
116 |
acaataaattatgtgattctcgccattttatttagagcttatttttctaatatagtagaacgcaaa-taaattttcaacaaataaatgtcggtatatcaa |
214 |
Q |
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| T |
4045786 |
acaataaattatatgattctcgccattttatttagagcttatttttctaatatagtagaactcaaaatgaattttcaacaaataaatgtcggtatatcaa |
4045885 |
T |
|
| Q |
215 |
atatgagtaatatgtcatacatcagaagaaaaaatgaacgttgaaaaatttataaatgagaggatcatatttcaaagtgttgtatttctccaattgtatg |
314 |
Q |
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| T |
4045886 |
atatgagtaatatgtcatacatcagaagaaaaaatgaacgttgaaaaatttataaatgagaggatcatatttcaaagtgttgtatttctccaattgtatg |
4045985 |
T |
|
| Q |
315 |
attgttcaagatttaatgtgataatcctccaaacctcatcataaccaacaataaaataccaaatgctnnnnnnngaatgctaaaatgaacacttagaatc |
414 |
Q |
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| T |
4045986 |
attgtttaagatttgatgtgataatcctccaaacctcatcataaccaacaataaaataccaaatgctcaaaaaagaatgctaaaattaacacttagaatc |
4046085 |
T |
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| Q |
415 |
acggttgtgtgtcttaggttgcgttggattcaaagtttgtaatgttattcttagga |
470 |
Q |
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| T |
4046086 |
acgattgtgtgtcttaggttgcgttggattcaaagtttgtaatgttattcttagga |
4046141 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 208 - 269
Target Start/End: Complemental strand, 2441315 - 2441254
Alignment:
| Q |
208 |
atatcaaatatgagtaatatgtcatacatcagaagaaaaaatgaacgttgaaaaatttataa |
269 |
Q |
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||||||| | |||||||||||||||||||| || | |||||||||||||||| | ||||||| |
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| T |
2441315 |
atatcaagtgtgagtaatatgtcatacatcggatgtaaaaatgaacgttgaacattttataa |
2441254 |
T |
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