View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19755_high_22 (Length: 431)
Name: NF19755_high_22
Description: NF19755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19755_high_22 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 19 - 431
Target Start/End: Original strand, 43725909 - 43726321
Alignment:
| Q |
19 |
gatgttcctaattcaacattcactattgatccatatggaaacggaggtatgattgtaagttcaagtagtttaataacgatgttggagaatgacacctata |
118 |
Q |
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| T |
43725909 |
gatgttcctaattcaacattcactattgatccatatggaaacggaggtatgattgtaagttcaagtagtttaataacgatgttggagaatgacacctata |
43726008 |
T |
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| Q |
119 |
atgtcgtgcgtgatgcttttgtggccaagactcaacatttggaacgtttaaaggcttttttacagtttgacacatgttataatttgtcgtctaataatac |
218 |
Q |
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| T |
43726009 |
atgtcgtgcgtgatgcttttgtggccaagactcaacatttggaacgtttaaaggcttttttacagtttgacacatgttataatttgtcgtctaataatac |
43726108 |
T |
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| Q |
219 |
tgtggagttgcctatagtggagtttgaagtaaatgatgggaaatcgtggttgttgccgaaggagagttatttgtatgcagtggataagaatggaacattt |
318 |
Q |
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| T |
43726109 |
tgtggagttgccgatattggagtttgaagtaaatgatgggaaatcgtggttgttgccgaaggagagttatttgtatgcagtggataagaatggaacattt |
43726208 |
T |
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| Q |
319 |
tgctttgcttttgcaccgtcaaaaggatcgttttcaattttagggactttacagcaatacgggacacgtgtcacctttgatcttgttaactctttcgttt |
418 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43726209 |
tgctttgcgtttgcaccgtcaaaaggatcgttttcaattttagggactttacagcaatacgggacacgtgtcacctttgatcttgttaactctttcgttt |
43726308 |
T |
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| Q |
419 |
atttacacaccct |
431 |
Q |
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| T |
43726309 |
atttacacaccct |
43726321 |
T |
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