View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19755_high_32 (Length: 369)
Name: NF19755_high_32
Description: NF19755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19755_high_32 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 38581866 - 38582234
Alignment:
| Q |
1 |
agtgataaaagagtccatctcatgaaaaaatgtcaaactcttgaattaaacaagttaactcgcaagtaaactcttttatttctctagtatcaatagttta |
100 |
Q |
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| T |
38581866 |
agtgataaaagagtccatctcatgaaaaaatgtcaaactcttgaattaaacaagttatctcgcaagtaaactcttttatttctctagtatcaatagttta |
38581965 |
T |
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| Q |
101 |
caaagaatttcaatctctccacattttgtggtatcacaattaatgtctaatgtccttatttatttctcttaattaatctgtattagtcctataggaattt |
200 |
Q |
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| T |
38581966 |
caaagaatttcaatctctccacattttgtggtatcacaattaatgtctaatgtccttatttatttctcttaattaatctgtattagtcctataggaattt |
38582065 |
T |
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| Q |
201 |
ctacttgcttttcgtatacaacattgtggtaataattaatgaaatttaatttcaacctttagtgaatccaagatcaaagggtataccagtggcaggcaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38582066 |
ctacttgcttttcgtatacaacattgtggtaataattaatgaaatttaatttcaacctttagtgaatccaagatcaaagggtataccagtggcaggcaac |
38582165 |
T |
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| Q |
301 |
catacaccaccttcaatccatttagcagcagtatatttagttgcatcagctttgccaagaacacccttt |
369 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
38582166 |
catacaccaccttcaatccattgagcagcagtatatttagttgcatcagctttgctaagaacacccttt |
38582234 |
T |
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