View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19755_high_38 (Length: 323)
Name: NF19755_high_38
Description: NF19755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19755_high_38 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 12 - 305
Target Start/End: Complemental strand, 55287350 - 55287059
Alignment:
| Q |
12 |
aatacttcaagcaaaacaggatgagctttttacccataatactgtaacagtgatcatagatattagcataacattggcatacagttatttagcacgaagc |
111 |
Q |
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| T |
55287350 |
aatacttcaagcaaaacaggatgagcttt--acccagaatactgtaacagtgatcatagatattagcataacattggcatacagttatttagcacgaagc |
55287253 |
T |
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| Q |
112 |
ttggagctcttctgaagagatttcatgctagcagacaatataacagtggtgccaatcatatatgaaatgacaacagagttcaatttgatatacaaaaact |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55287252 |
ttggagctcttctgaagagatttcatgctagcagacaatataacagtggtgccaatcatatatgaaatgacaacagagttcaatttgatatacaaaaact |
55287153 |
T |
|
| Q |
212 |
atgataatcatcaaaacaaatgagtcactgtggtcaaaagtaaaactggattataaagaaagatttttgcacataccactatatcaggcagatt |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
55287152 |
atgataatcatcaaaacaaatgagtcactgtggtcaaaagtaaaactggattataaagaaagattgttgcacataccactatatcaggcagatt |
55287059 |
T |
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