View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19755_high_49 (Length: 262)

Name: NF19755_high_49
Description: NF19755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19755_high_49
NF19755_high_49
[»] chr2 (14 HSPs)
chr2 (144-251)||(30610346-30610453)
chr2 (163-254)||(2383026-2383117)
chr2 (162-251)||(352303-352393)
chr2 (178-254)||(40324411-40324487)
chr2 (162-251)||(31525194-31525282)
chr2 (181-249)||(19133827-19133895)
chr2 (163-248)||(12211267-12211351)
chr2 (144-243)||(18295455-18295551)
chr2 (171-251)||(21501227-21501307)
chr2 (175-251)||(41384914-41384990)
chr2 (144-213)||(16673773-16673841)
chr2 (162-251)||(31516442-31516530)
chr2 (162-247)||(31522707-31522791)
chr2 (144-251)||(34118998-34119106)
[»] chr3 (11 HSPs)
chr3 (162-251)||(37681283-37681372)
chr3 (163-254)||(3806603-3806694)
chr3 (163-254)||(44177050-44177141)
chr3 (163-254)||(44183731-44183822)
chr3 (163-254)||(37980232-37980323)
chr3 (165-243)||(21301810-21301888)
chr3 (162-251)||(26976176-26976265)
chr3 (163-232)||(45648105-45648174)
chr3 (175-250)||(1070584-1070658)
chr3 (206-251)||(19578661-19578706)
chr3 (177-250)||(28247260-28247333)
[»] chr1 (9 HSPs)
chr1 (162-251)||(11461996-11462085)
chr1 (163-254)||(8028721-8028811)
chr1 (162-251)||(38339880-38339969)
chr1 (163-251)||(50942533-50942620)
chr1 (163-251)||(50942406-50942493)
chr1 (183-251)||(13188156-13188222)
chr1 (163-240)||(6012703-6012780)
chr1 (182-251)||(25614432-25614501)
chr1 (163-243)||(9852856-9852936)
[»] scaffold0035 (1 HSPs)
scaffold0035 (163-254)||(81762-81853)
[»] chr8 (13 HSPs)
chr8 (163-254)||(415114-415205)
chr8 (163-254)||(1657845-1657936)
chr8 (163-254)||(14031796-14031887)
chr8 (163-254)||(37402240-37402331)
chr8 (177-254)||(36801826-36801903)
chr8 (163-246)||(6335791-6335875)
chr8 (162-247)||(22808808-22808894)
chr8 (163-249)||(29038370-29038455)
chr8 (162-220)||(34331892-34331950)
chr8 (163-251)||(37117730-37117817)
chr8 (162-251)||(40498483-40498572)
chr8 (172-251)||(13755958-13756037)
chr8 (205-251)||(3539279-3539325)
[»] chr7 (14 HSPs)
chr7 (163-254)||(5096550-5096641)
chr7 (163-254)||(39753630-39753721)
chr7 (175-251)||(11485554-11485627)
chr7 (171-251)||(13861492-13861572)
chr7 (163-254)||(24052687-24052778)
chr7 (185-251)||(5789183-5789249)
chr7 (178-251)||(9059843-9059915)
chr7 (162-246)||(1762658-1762742)
chr7 (163-251)||(35364893-35364981)
chr7 (162-251)||(14624065-14624154)
chr7 (197-251)||(31309716-31309770)
chr7 (174-247)||(14240551-14240624)
chr7 (197-246)||(25089111-25089160)
chr7 (144-251)||(4962220-4962328)
[»] chr5 (6 HSPs)
chr5 (163-254)||(27263868-27263959)
chr5 (163-254)||(28394696-28394787)
chr5 (163-254)||(41879835-41879926)
chr5 (163-254)||(31172328-31172419)
chr5 (162-250)||(25536908-25536997)
chr5 (195-251)||(13998666-13998722)
[»] chr4 (8 HSPs)
chr4 (163-254)||(23315842-23315933)
chr4 (163-247)||(22160292-22160377)
chr4 (163-251)||(23403878-23403966)
chr4 (145-251)||(3083191-3083298)
chr4 (197-251)||(9625374-9625428)
chr4 (180-251)||(26492323-26492393)
chr4 (165-251)||(19554862-19554948)
chr4 (180-251)||(38004330-38004402)
[»] chr6 (9 HSPs)
chr6 (162-251)||(15960356-15960445)
chr6 (165-254)||(13846479-13846568)
chr6 (162-251)||(12185266-12185354)
chr6 (190-251)||(20469617-20469678)
chr6 (162-251)||(31383371-31383458)
chr6 (162-251)||(11734155-11734242)
chr6 (197-251)||(25342084-25342138)
chr6 (162-251)||(34672635-34672724)
chr6 (176-251)||(5493028-5493103)


Alignment Details
Target: chr2 (Bit Score: 104; Significance: 6e-52; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 144 - 251
Target Start/End: Complemental strand, 30610453 - 30610346
Alignment:
Q  144 cactacaataagaacaatttatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaat 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  30610453 cactacaataagaacaatttatatatgaaagggatagagattttgagctgaactttttataattccaattgtaccctgaaacaaattttcatatattaat 30610354  T
Q  244 gttatatt 251  Q
    ||||||||    
T  30610353 gttatatt 30610346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 163 - 254
Target Start/End: Original strand, 2383026 - 2383117
Alignment:
Q  163 tatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatattctt 254  Q
    |||||||||| || ||||||| |||| |||||| ||||||||||||||||| |||||| ||| |||||||| ||||||||||||| ||||||    
T  2383026 tatatatgaagggaatagagactttgggctgaattttttataatttcaattatacccttaaataaattttcctatattaatgttacattctt 2383117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 162 - 251
Target Start/End: Original strand, 352303 - 352393
Alignment:
Q  162 ttatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccc-tgaaacaaattttcatatattaatgttatatt 251  Q
    ||||||||||| ||||||||||||||| ||| || ||||||||||| ||||| ||||| | ||| |||||||| |||||||||||||||||    
T  352303 ttatatatgaaggggatagagattttgggctaaattttttataattccaattatacccttaaaataaattttcctatattaatgttatatt 352393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 254
Target Start/End: Complemental strand, 40324487 - 40324411
Alignment:
Q  178 tagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatattctt 254  Q
    |||||| |||| |||||| ||||||||||||||||| |||||| |||||||||| | ||||||||||||| ||||||    
T  40324487 tagagactttgggctgaaatttttataatttcaattatacccttaaacaaatttccctatattaatgttacattctt 40324411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 162 - 251
Target Start/End: Original strand, 31525194 - 31525282
Alignment:
Q  162 ttatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatatt 251  Q
    ||||||||||| |||||||||||||| || |||  ||||||||||| ||||| |||||| ||| |||||||  |||||||||||||||||    
T  31525194 ttatatatgaaggggatagagattttaagttgat-tttttataattccaattatacccttaaataaatttttctatattaatgttatatt 31525282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 181 - 249
Target Start/End: Original strand, 19133827 - 19133895
Alignment:
Q  181 agattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttata 249  Q
    |||||| ||| |||| ||||||||||||||||| |||||| ||||||||||||  ||||||||||||||    
T  19133827 agatttggagttgaaatttttataatttcaattatacccttaaacaaattttccaatattaatgttata 19133895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 248
Target Start/End: Original strand, 12211267 - 12211351
Alignment:
Q  163 tatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttat 248  Q
    ||||||| || |||||| ||||| ||| ||||| ||||||||||||||||| || ||| |||||| |||| |||||||||||||||    
T  12211267 tatatataaaggggataaagattatgatctgaa-tttttataatttcaattatatccttaaacaattttttatatattaatgttat 12211351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 243
Target Start/End: Complemental strand, 18295551 - 18295455
Alignment:
Q  144 cactacaataagaacaatttatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaat 243  Q
    |||||||||| ||||||| |   ||||||  |||||||||||||| |||||| |||||||||||||| || |||  | |||||||||||| |||||||||    
T  18295551 cactacaataggaacaatat---tatgaagtggatagagattttgggctgaattttttataatttcatttatacttttaaacaaattttcctatattaat 18295455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 251
Target Start/End: Complemental strand, 21501307 - 21501227
Alignment:
Q  171 aaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatatt 251  Q
    |||||||||||||||||| ||| || ||||||||||| ||||  ||| || |||||||||||| ||||| |||||| ||||    
T  21501307 aaagggatagagattttgggctaaagtttttataattccaatcatactcttaaacaaattttcctatataaatgttttatt 21501227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 251
Target Start/End: Original strand, 41384914 - 41384990
Alignment:
Q  175 ggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatatt 251  Q
    |||||||||||||| |   || ||||||||||||||||| |||  | |||||||||||| |||||||||||||||||    
T  41384914 ggatagagattttgggtcaaattttttataatttcaattatacatttaaacaaattttcctatattaatgttatatt 41384990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 213
Target Start/End: Complemental strand, 16673841 - 16673773
Alignment:
Q  144 cactacaataagaacaat-ttatatatgaaagggatagagattttgagctgaactttttataatttcaatt 213  Q
    ||||||||||| |||||| ||||| ||||| ||||||||||||||| ||||||| ||||||||||||||||    
T  16673841 cactacaataa-aacaatattataaatgaaggggatagagattttgggctgaac-ttttataatttcaatt 16673773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 251
Target Start/End: Original strand, 31516442 - 31516530
Alignment:
Q  162 ttatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatatt 251  Q
    ||||||||||| ||||||||||||||  | |||  ||||||||||| ||||| || | | |||||||||||  |||||||||||||||||    
T  31516442 ttatatatgaaggggatagagattttaggttgat-tttttataattccaattatatcgttaaacaaatttttctatattaatgttatatt 31516530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 247
Target Start/End: Original strand, 31522707 - 31522791
Alignment:
Q  162 ttatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgtta 247  Q
    ||||||||||| ||||||||||||||  | |||  ||||||||||| ||||| |||||| ||||||||||   |||||||||||||    
T  31522707 ttatatatgaaggggatagagattttaggttgat-tttttataattacaattatacccttaaacaaatttgtctatattaatgtta 31522791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 251
Target Start/End: Complemental strand, 34119106 - 34118998
Alignment:
Q  144 cactacaataagaacaat-ttatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaa 242  Q
    |||||||||| ||| ||| ||||| ||||  |||||||| ||||||  ||||| |||||||||||| |||| || | | ||| ||||||||  || ||||    
T  34119106 cactacaataggaataatattatacatgatggggatagaaattttggactgaattttttataatttgaattatatctttaaataaattttctcatcttaa 34119007  T
Q  243 tgttatatt 251  Q
    |||||||||    
T  34119006 tgttatatt 34118998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 162 - 251
Target Start/End: Original strand, 37681283 - 37681372
Alignment:
Q  162 ttatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatatt 251  Q
    ||||||||||| ||||| ||||||||| |||||| ||||||||||||||||| |||||| |||||||||||| |||||||||||||||||    
T  37681283 ttatatatgaaggggatggagattttgggctgaattttttataatttcaattatacccttaaacaaattttcctatattaatgttatatt 37681372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 163 - 254
Target Start/End: Original strand, 3806603 - 3806694
Alignment:
Q  163 tatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatattctt 254  Q
    |||||||||| || ||||||| |||| |||||| ||||||||||||||||| |||||| |||||||||||| ||||||||||||| ||||||    
T  3806603 tatatatgaagggaatagagactttgggctgaattttttataatttcaattatacccttaaacaaattttcctatattaatgttacattctt 3806694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 163 - 254
Target Start/End: Complemental strand, 44177141 - 44177050
Alignment:
Q  163 tatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatattctt 254  Q
    |||||||||| || ||||||| |||| |||||| ||||||||||||||||| |||||| |||||||||||| ||||||||||||| ||||||    
T  44177141 tatatatgaagggaatagagactttgggctgaattttttataatttcaattatacccttaaacaaattttcctatattaatgttacattctt 44177050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 163 - 254
Target Start/End: Complemental strand, 44183822 - 44183731
Alignment:
Q  163 tatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatattctt 254  Q
    |||||||||| || ||||||| |||| |||||| |||||||||||| |||| |||||| |||||||||||| ||||||||||||| ||||||    
T  44183822 tatatatgaagggaatagagagtttgggctgaattttttataattttaattatacccttaaacaaattttcctatattaatgttacattctt 44183731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 163 - 254
Target Start/End: Original strand, 37980232 - 37980323
Alignment:
Q  163 tatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatattctt 254  Q
    |||||||||| || ||||||| |||| |||||| |||||||||||| |||| ||||||  ||||||||||| ||||||||||||| ||||||    
T  37980232 tatatatgaagggaatagagactttgggctgaattttttataattttaattatacccttcaacaaattttcctatattaatgttacattctt 37980323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 243
Target Start/End: Complemental strand, 21301888 - 21301810
Alignment:
Q  165 tatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaat 243  Q
    |||||||| ||||||||||||||| |||||| |||||||||||  |||| |||||| |||||||||||  |||||||||    
T  21301888 tatatgaatgggatagagattttgggctgaattttttataattctaattatacccttaaacaaatttttctatattaat 21301810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 162 - 251
Target Start/End: Complemental strand, 26976265 - 26976176
Alignment:
Q  162 ttatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatatt 251  Q
    |||||||||||||| || ||||||||| | |||| | ||||||||||||||| |||| | ||| |||||||  |||||||||||||||||    
T  26976265 ttatatatgaaaggcattgagattttgggttgaattctttataatttcaattatacctttaaagaaatttttctatattaatgttatatt 26976176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 45648105 - 45648174
Alignment:
Q  163 tatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaatttt 232  Q
    |||||||||| |||||| |||||||| ||| || ||||||||||||||||| |||| | ||| |||||||    
T  45648105 tatatatgaaggggatatagattttgggctaaattttttataatttcaattatacctttaaataaatttt 45648174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 1070584 - 1070658
Alignment:
Q  175 ggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatat 250  Q
    ||||| |||||||| |||||| |||||||||||| ||   || | | |||||||||||||||||||||||||||||    
T  1070584 ggatatagattttgggctgaattttttataattttaaca-tatcattaaacaaattttcatatattaatgttatat 1070658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 19578661 - 19578706
Alignment:
Q  206 tttcaattgtaccctgaaacaaattttcatatattaatgttatatt 251  Q
    ||||||||||||||| ||||||||||||  ||| ||||||||||||    
T  19578661 tttcaattgtacccttaaacaaattttccaataataatgttatatt 19578706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 28247260 - 28247333
Alignment:
Q  177 atagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatat 250  Q
    |||||||||||| | || | |||||||  || ||||| |||||| ||||||||||||||||| | |||||||||    
T  28247260 atagagattttgggttggattttttattgttccaattatacccttaaacaaattttcatataatgatgttatat 28247333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 162 - 251
Target Start/End: Complemental strand, 11462085 - 11461996
Alignment:
Q  162 ttatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatatt 251  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||| ||| |||||||| || ||||||||||||||    
T  11462085 ttatatatgaaggggatagagattttgagctgaattttttataatttcaattatacccttaaataaattttcctacattaatgttatatt 11461996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 163 - 254
Target Start/End: Complemental strand, 8028811 - 8028721
Alignment:
Q  163 tatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatattctt 254  Q
    |||||||||| || ||||||| |||| |||||  ||||||||||||||||| |||||| |||||||||||| ||||||||||||| ||||||    
T  8028811 tatatatgaagggaatagagactttgggctgat-tttttataatttcaattatacccttaaacaaattttcctatattaatgttacattctt 8028721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 162 - 251
Target Start/End: Complemental strand, 38339969 - 38339880
Alignment:
Q  162 ttatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatatt 251  Q
    ||||||||||  ||| |||| | |||| |||||||||||||||||| ||||| |||||| || ||||||||| |||||||||||||||||    
T  38339969 ttatatatgacgggggtagaaaatttgggctgaactttttataattccaattatacccttaatcaaattttcctatattaatgttatatt 38339880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 163 - 251
Target Start/End: Complemental strand, 50942620 - 50942533
Alignment:
Q  163 tatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatatt 251  Q
    |||||||||| ||||||||||||||| ||| || ||||||||||||||||| ||   | |||||||||||| |||||||||||||||||    
T  50942620 tatatatgaaggggatagagattttgcgctaaa-tttttataatttcaattatatatttaaacaaattttcctatattaatgttatatt 50942533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 251
Target Start/End: Complemental strand, 50942493 - 50942406
Alignment:
Q  163 tatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatatt 251  Q
    |||||||||| ||||||| ||||||| ||| || ||||||||||||||||| ||   | |||||||||||  |||||||||||||||||    
T  50942493 tatatatgaaggggatagtgattttgcgctaaa-tttttataatttcaattatatatttaaacaaattttactatattaatgttatatt 50942406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 13188222 - 13188156
Alignment:
Q  183 attttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatatt 251  Q
    |||||| |||||| ||||||||||||||||| ||||||  || |||||||  |||||||||||||||||    
T  13188222 attttgggctgaattttttataatttcaattataccct--aataaatttttctatattaatgttatatt 13188156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 240
Target Start/End: Complemental strand, 6012780 - 6012703
Alignment:
Q  163 tatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatatt 240  Q
    |||||||||| |||||||||| |||  | |||| |||||||||||  |||| |||| | ||||| |||||||||||||    
T  6012780 tatatatgaaggggatagagacttttggttgaattttttataattctaattataccattaaacatattttcatatatt 6012703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 251
Target Start/End: Complemental strand, 25614501 - 25614432
Alignment:
Q  182 gattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatatt 251  Q
    ||||||| |||| | ||||||||||||| ||| || ||| |||||||||||  ||||||||||| |||||    
T  25614501 gattttgggctggattttttataatttctattataacctcaaacaaatttttctatattaatgtgatatt 25614432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 243
Target Start/End: Complemental strand, 9852936 - 9852856
Alignment:
Q  163 tatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaat 243  Q
    ||||||||||  || ||||||| || || | |||||||||||||| ||||| || ||| ||| |||||||| |||||||||    
T  9852936 tatatatgaagaggttagagatattcagataaactttttataattacaattttatccttaaataaattttcctatattaat 9852856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 163 - 254
Target Start/End: Original strand, 81762 - 81853
Alignment:
Q  163 tatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatattctt 254  Q
    |||||||||| || ||||||| |||| |||||| ||||||||||||||||| |||||| |||||||||||| ||||||||||||| ||||||    
T  81762 tatatatgaagggaatagagactttgggctgaattttttataatttcaattatacccttaaacaaattttcctatattaatgttacattctt 81853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 163 - 254
Target Start/End: Original strand, 415114 - 415205
Alignment:
Q  163 tatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatattctt 254  Q
    |||||||||| || ||||||| |||| |||||| ||||||||||||||||| |||||| |||||||||||| ||||||||||||| ||||||    
T  415114 tatatatgaagggaatagagactttgggctgaattttttataatttcaattatacccttaaacaaattttcctatattaatgttacattctt 415205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 163 - 254
Target Start/End: Original strand, 1657845 - 1657936
Alignment:
Q  163 tatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatattctt 254  Q
    |||||||||| || ||||||| |||| |||||| ||||||||||||||||| |||||| |||||||||||| ||||||||||||| ||||||    
T  1657845 tatatatgaagggaatagagactttgggctgaattttttataatttcaattatacccttaaacaaattttcctatattaatgttacattctt 1657936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 163 - 254
Target Start/End: Complemental strand, 14031887 - 14031796
Alignment:
Q  163 tatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatattctt 254  Q
    |||||||||| || ||||||| |||| |||||| ||||||||||||||||| |||||| |||||||||||| ||||||||||||| ||||||    
T  14031887 tatatatgaagggaatagagactttgggctgaattttttataatttcaattatacccttaaacaaattttcctatattaatgttacattctt 14031796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 163 - 254
Target Start/End: Complemental strand, 37402331 - 37402240
Alignment:
Q  163 tatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatattctt 254  Q
    |||||||||| |  ||||||| |||| |||||| ||||||||||||||||| |||||| |||||||||||| ||||||||||||| ||||||    
T  37402331 tatatatgaaggaaatagagactttgggctgaattttttataatttcaattatacccttaaacaaattttcctatattaatgttacattctt 37402240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 177 - 254
Target Start/End: Original strand, 36801826 - 36801903
Alignment:
Q  177 atagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatattctt 254  Q
    ||||||| |||| |||||| ||||||||||||||||| |||||| |||||||||||| ||||||||||||| ||||||    
T  36801826 atagagactttgggctgaattttttataatttcaattatacccttaaacaaattttcctatattaatgttacattctt 36801903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 163 - 246
Target Start/End: Original strand, 6335791 - 6335875
Alignment:
Q  163 tatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccc-tgaaacaaattttcatatattaatgtt 246  Q
    |||||||||| || ||||||| |||| |||||| ||||||||||||||||| ||||| | |||||||||||| ||||||||||||    
T  6335791 tatatatgaagggaatagagactttgggctgaattttttataatttcaattataccctttaaacaaattttcctatattaatgtt 6335875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 247
Target Start/End: Complemental strand, 22808894 - 22808808
Alignment:
Q  162 ttatatatgaaagggatagagattttgagctgaacttttt-ataatttcaattgtaccctgaaacaaattttcatatattaatgtta 247  Q
    ||||||||||| ||||| |||||||||  ||||| ||||| |||||||||||| |||||| |||||||||||  |||||||||||||    
T  22808894 ttatatatgaaggggattgagattttggactgaatttttttataatttcaattatacccttaaacaaatttttctatattaatgtta 22808808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 249
Target Start/End: Complemental strand, 29038455 - 29038370
Alignment:
Q  163 tatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttata 249  Q
    |||||||||| ||| ||| ||||||| | |||| | ||||||||||||||| |||||| |||||||||||| ||| |||||||||||    
T  29038455 tatatatgaagggg-tagggattttgtgttgaattatttataatttcaattatacccttaaacaaattttcctatcttaatgttata 29038370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 220
Target Start/End: Original strand, 34331892 - 34331950
Alignment:
Q  162 ttatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccct 220  Q
    ||||||||||| ||||||||||||||| ||| || ||||||||||||||||| ||||||    
T  34331892 ttatatatgaaggggatagagattttgggctaaattttttataatttcaattataccct 34331950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 251
Target Start/End: Original strand, 37117730 - 37117817
Alignment:
Q  163 tatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatatt 251  Q
    ||||||| || || |||||||||||| |||||  ||||||||||| ||| | |||| | |||||||||||||||||| |||||||||||    
T  37117730 tatatattaagggaatagagattttgtgctgatttttttataattccaagtatacc-taaaacaaattttcatatataaatgttatatt 37117817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 251
Target Start/End: Complemental strand, 40498572 - 40498483
Alignment:
Q  162 ttatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatatt 251  Q
    ||||||||||| |||| ||||| |||| |||||| ||||||||||| ||||| |||  | |||||||| ||| | ||||||| |||||||    
T  40498572 ttatatatgaacgggacagagagtttgggctgaattttttataattccaattatacttttaaacaaatattcctttattaatattatatt 40498483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 251
Target Start/End: Original strand, 13755958 - 13756037
Alignment:
Q  172 aagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatatt 251  Q
    ||||| ||||||||||| ||| ||   | ||||||||||||| |||||| |||||||||||| | | |||||||||||||    
T  13755958 aaggggtagagattttgggctaaataatatataatttcaattatacccttaaacaaattttcctttcttaatgttatatt 13756037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 251
Target Start/End: Original strand, 3539279 - 3539325
Alignment:
Q  205 atttcaattgtaccctgaaacaaattttcatatattaatgttatatt 251  Q
    ||||||||| |||||| ||||||||||||||||| ||| ||||||||    
T  3539279 atttcaattatacccttaaacaaattttcatataataacgttatatt 3539325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 163 - 254
Target Start/End: Complemental strand, 5096641 - 5096550
Alignment:
Q  163 tatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatattctt 254  Q
    |||||||||| || ||||||| |||| |||||| ||||||||||||||||| |||||| |||||||||||| ||||||||||||| ||||||    
T  5096641 tatatatgaagggaatagagactttgggctgaattttttataatttcaattatacccttaaacaaattttcctatattaatgttacattctt 5096550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 163 - 254
Target Start/End: Complemental strand, 39753721 - 39753630
Alignment:
Q  163 tatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatattctt 254  Q
    |||||||||| || ||||||| |||| |||||| ||||||||||||||||| |||||| |||||||||||  ||||||||||||| ||||||    
T  39753721 tatatatgaagggaatagagactttgggctgaattttttataatttcaattataccctcaaacaaatttttctatattaatgttacattctt 39753630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 175 - 251
Target Start/End: Original strand, 11485554 - 11485627
Alignment:
Q  175 ggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatatt 251  Q
    |||||||||||||  |||||| |||||||||||||||||   |||| |||||||||||| |||||||||||||||||    
T  11485554 ggatagagattttaggctgaattttttataatttcaatt---cccttaaacaaattttcctatattaatgttatatt 11485627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 171 - 251
Target Start/End: Complemental strand, 13861572 - 13861492
Alignment:
Q  171 aaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatatt 251  Q
    ||||||| |||||||||| |||||| ||||||||||| ||||| |||||| |||  | ||||| |||||||||||||||||    
T  13861572 aaagggaaagagattttgggctgaaatttttataattccaattatacccttaaaggagttttcctatattaatgttatatt 13861492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 254
Target Start/End: Complemental strand, 24052778 - 24052687
Alignment:
Q  163 tatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatattctt 254  Q
    ||||||||||||| ||||||| |||| |||||| |||||||||||  |||| |||||| ||| | |||||| | ||||||||||| ||||||    
T  24052778 tatatatgaaaggaatagagactttgggctgaattttttataattctaattatacccttaaatagattttcctgtattaatgttacattctt 24052687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 185 - 251
Target Start/End: Original strand, 5789183 - 5789249
Alignment:
Q  185 tttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatatt 251  Q
    |||| |||||| ||||||| ||||||||| |||||  |||||||||||| |||||||||||||||||    
T  5789183 tttgggctgaaatttttatgatttcaattatacccataaacaaattttcttatattaatgttatatt 5789249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 251
Target Start/End: Original strand, 9059843 - 9059915
Alignment:
Q  178 tagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatatt 251  Q
    ||||||||| ||||||||||||| ||||||| |||  ||| || |||||||||||| |||||||||||||||||    
T  9059843 tagagatttggagctgaactttt-ataattttaatcatacacttaaacaaattttcctatattaatgttatatt 9059915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 162 - 246
Target Start/End: Complemental strand, 1762742 - 1762658
Alignment:
Q  162 ttatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgtt 246  Q
    |||||||| ||  ||||| |||||||| |||| | ||||||||||| ||||| |||||| ||| |||||||| ||||||||||||    
T  1762742 ttatatatcaagtggataaagattttgggctgtattttttataattccaattatacccttaaataaattttcctatattaatgtt 1762658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 251
Target Start/End: Original strand, 35364893 - 35364981
Alignment:
Q  163 tatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatatt 251  Q
    |||||| ||| | |||| |||||||| ||| || ||||||||||| ||||| || | | |||||||||||| |||||||||||||||||    
T  35364893 tatatacgaaggagatatagattttgggctaaattttttataattccaattatatcttcaaacaaattttcttatattaatgttatatt 35364981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 251
Target Start/End: Complemental strand, 14624154 - 14624065
Alignment:
Q  162 ttatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatatt 251  Q
    ||||| ||||| || || |||||| || |||||  |||||  |||||||||| |||||| || |||||||||||||||||||||| ||||    
T  14624154 ttatacatgaatggtattgagattatgggctgattttttttaaatttcaattatacccttaatcaaattttcatatattaatgttgtatt 14624065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 31309716 - 31309770
Alignment:
Q  197 tttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatatt 251  Q
    |||||||||||  |||| |||||| |||||||||||  |||||||||||||||||    
T  31309716 tttttataattctaattatacccttaaacaaattttattatattaatgttatatt 31309770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 174 - 247
Target Start/End: Original strand, 14240551 - 14240624
Alignment:
Q  174 gggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgtta 247  Q
    ||||||||||||||| | | |  |||||||||||  |||| || |||  |||||||||||||||||||||||||    
T  14240551 gggatagagattttgggttaatttttttataattctaattatatccttgaacaaattttcatatattaatgtta 14240624  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 25089111 - 25089160
Alignment:
Q  197 tttttataatttcaattgtaccctgaaacaaattttcatatattaatgtt 246  Q
    ||||||| ||||||||| |||||| |||||||||||  ||||||||||||    
T  25089111 tttttattatttcaattatacccttaaacaaatttttctatattaatgtt 25089160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 251
Target Start/End: Original strand, 4962220 - 4962328
Alignment:
Q  144 cactacaataagaacaat-ttatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaa 242  Q
    |||| ||||| ||||||| |||||||| ||  ||||  |||||||  |||||| |||||||| |||| ||| || ||| |||||||||||| | ||||||    
T  4962220 cacttcaataggaacaatattatatatcaagaggatgaagatttttggctgaattttttatattttctattatatcctaaaacaaattttcttgtattaa 4962319  T
Q  243 tgttatatt 251  Q
    | |||||||    
T  4962320 tattatatt 4962328  T

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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 163 - 254
Target Start/End: Complemental strand, 27263959 - 27263868
Alignment:
Q  163 tatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatattctt 254  Q
    |||||||||| || ||||||| |||| |||||| ||||||||||||||||| |||||| |||||||||||| ||||||||||||| ||||||    
T  27263959 tatatatgaagggaatagagactttgggctgaattttttataatttcaattatacccttaaacaaattttcctatattaatgttacattctt 27263868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 163 - 254
Target Start/End: Complemental strand, 28394787 - 28394696
Alignment:
Q  163 tatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatattctt 254  Q
    |||||||||| || ||||||| |||| |||||| ||||||||||||||||| |||||| |||||||||||| ||||||||||||| ||||||    
T  28394787 tatatatgaagggaatagagactttgggctgaattttttataatttcaattatacccttaaacaaattttcctatattaatgttacattctt 28394696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 163 - 254
Target Start/End: Complemental strand, 41879926 - 41879835
Alignment:
Q  163 tatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatattctt 254  Q
    |||||||||| || ||||||| |||| |||||| ||||||||||||||||| |||||| |||||||||||| ||||||||||||| ||||||    
T  41879926 tatatatgaagggaatagagactttgggctgaattttttataatttcaattatacccttaaacaaattttcctatattaatgttacattctt 41879835  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 163 - 254
Target Start/End: Complemental strand, 31172419 - 31172328
Alignment:
Q  163 tatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatattctt 254  Q
    |||||||||| || || |||| |||| |||||| ||||||||||||||||| |||||| |||||||||||  ||||||||||||| ||||||    
T  31172419 tatatatgaagggaatcgagactttgggctgaattttttataatttcaattataccctcaaacaaatttttctatattaatgttacattctt 31172328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 250
Target Start/End: Original strand, 25536908 - 25536997
Alignment:
Q  162 ttatatatgaaagggatagagattttgagctgaactttt-tataatttcaattgtaccctgaaacaaattttcatatattaatgttatat 250  Q
    ||||||||||| ||||| || |||||| |||||| |||| |||||||  | || |||||| |||||||||||  ||||||||||||||||    
T  25536908 ttatatatgaaggggatggaaattttgggctgaatttttttataattaaagttatacccttaaacaaatttttttatattaatgttatat 25536997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 13998722 - 13998666
Alignment:
Q  195 actttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatatt 251  Q
    ||||||||| ||||||| | |||||| ||||||||||||||||| || |||||||||    
T  13998722 actttttattatttcaactatacccttaaacaaattttcatataatagtgttatatt 13998666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 163 - 254
Target Start/End: Original strand, 23315842 - 23315933
Alignment:
Q  163 tatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatattctt 254  Q
    |||||||||| || ||||||| |||| |||||| ||||||||||||||||| |||||| |||||||||||| ||||||||||||| ||||||    
T  23315842 tatatatgaagggaatagagactttgggctgaattttttataatttcaattatacccttaaacaaattttcctatattaatgttacattctt 23315933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 163 - 247
Target Start/End: Original strand, 22160292 - 22160377
Alignment:
Q  163 tatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccc-tgaaacaaattttcatatattaatgtta 247  Q
    |||||||||| || ||||||| |||| |||||| ||||||||||||||||| ||||| | |||||||||||| |||||||||||||    
T  22160292 tatatatgaagggaatagagactttgggctgaattttttataatttcaattataccctttaaacaaattttcctatattaatgtta 22160377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 251
Target Start/End: Original strand, 23403878 - 23403966
Alignment:
Q  163 tatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatatt 251  Q
    |||||||||| ||||||||||||||| ||| ||||||||||| ||  |||| |||||| |||||||||||| ||| ||||  |||||||    
T  23403878 tatatatgaaggggatagagattttgggctaaactttttatagttcaaattatacccttaaacaaattttcctattttaaatttatatt 23403966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 251
Target Start/End: Original strand, 3083191 - 3083298
Alignment:
Q  145 actacaataagaacaat-ttatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaat 243  Q
    |||||||||  |||||| ||||||| ||||| |||||||||||||    ||| ||||||||||||||||| |||||| || |||| ||| |||||| |||    
T  3083191 actacaatatcaacaatattatatacgaaagagatagagattttggaaagaattttttataatttcaattatacccttaagcaaaattttatatatcaat 3083290  T
Q  244 gttatatt 251  Q
    ||||||||    
T  3083291 gttatatt 3083298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 9625374 - 9625428
Alignment:
Q  197 tttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatatt 251  Q
    |||||||||||  |||| || |||||||||||||||| |||||||||||||||||    
T  9625374 tttttataattcaaattataacctgaaacaaattttcctatattaatgttatatt 9625428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 26492323 - 26492393
Alignment:
Q  180 gagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatatt 251  Q
    ||||||||| |||||| ||||||||| || || | ||| || |||||||||||| |||||||||||||||||    
T  26492323 gagattttgtgctgaa-tttttataactttaaatatactcttaaacaaattttcctatattaatgttatatt 26492393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 251
Target Start/End: Complemental strand, 19554948 - 19554862
Alignment:
Q  165 tatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatatt 251  Q
    |||||||||||| ||||||||||| ||| |  |||||||||||   | | ||||||  ||||||||||  |||||||||||||||||    
T  19554948 tatatgaaaggggtagagattttgggctaagttttttataattctgactatacccttgaacaaatttttctatattaatgttatatt 19554862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 38004330 - 38004402
Alignment:
Q  180 gagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatat-attaatgttatatt 251  Q
    ||||||||| |||||| ||||| | ||||||||| ||||||  ||||||||||| ||| | ||||||||||||    
T  38004330 gagattttgggctgaattttttgttatttcaattatacccttgaacaaattttcctataaataatgttatatt 38004402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 162 - 251
Target Start/End: Complemental strand, 15960445 - 15960356
Alignment:
Q  162 ttatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatatt 251  Q
    ||||||||||| | |||||| |||||| |||||| ||||||||||||||||| |||||| |||||||||||  ||||||||| |||||||    
T  15960445 ttatatatgaatgagatagaaattttgggctgaattttttataatttcaattatacccttaaacaaatttttctatattaattttatatt 15960356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 165 - 254
Target Start/End: Original strand, 13846479 - 13846568
Alignment:
Q  165 tatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatattctt 254  Q
    |||||||| || ||||||| |||| |||||| |||||||||||| |||| |||| | |||||||||||| ||||||||||||| ||||||    
T  13846479 tatatgaagggaatagagactttgggctgaattttttataatttaaattataccattaaacaaattttcctatattaatgttacattctt 13846568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 162 - 251
Target Start/End: Original strand, 12185266 - 12185354
Alignment:
Q  162 ttatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatatt 251  Q
    ||||||| |||  ||||||| ||||||||||||| ||||||||||| ||||| ||  || |||||||||||| |||||||||||||||||    
T  12185266 ttatataagaagaggatagatattttgagctgaa-tttttataattccaattatattcttaaacaaattttcttatattaatgttatatt 12185354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 190 - 251
Target Start/End: Complemental strand, 20469678 - 20469617
Alignment:
Q  190 gctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatatt 251  Q
    |||||| ||||||||||| ||||| |||||| |||||||||||| |||||||||||||||||    
T  20469678 gctgaattttttataattccaattatacccttaaacaaattttcctatattaatgttatatt 20469617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 162 - 251
Target Start/End: Original strand, 31383371 - 31383458
Alignment:
Q  162 ttatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatatt 251  Q
    ||||||||||| ||||| ||||||||| |||||  ||||||||||| ||||| ||| || |||||||||||| |||||||||||||||||    
T  31383371 ttatatatgaaggggattgagattttg-gctgatttttttataattccaattatacacttaaacaaattttc-tatattaatgttatatt 31383458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 251
Target Start/End: Original strand, 11734155 - 11734242
Alignment:
Q  162 ttatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatatt 251  Q
    |||||||||||  |||| ||||||||| |||||| ||||||||||| || || |||| | ||| |||||||| |||||||||||||||||    
T  11734155 ttatatatgaa--ggatcgagattttgggctgaattttttataattccagttatacctttaaataaattttcctatattaatgttatatt 11734242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 25342084 - 25342138
Alignment:
Q  197 tttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatatt 251  Q
    ||||||||||||||||| |||||| |||||||||||  |||||||||||||||||    
T  25342084 tttttataatttcaattatacccttaaacaaatttttctatattaatgttatatt 25342138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 251
Target Start/End: Complemental strand, 34672724 - 34672635
Alignment:
Q  162 ttatatatgaaagggatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatatt 251  Q
    |||||||||||  |||| ||||||||   ||||| ||||||||||| ||||| |||||| ||| |||||||  |||||||||||||||||    
T  34672724 ttatatatgaagaggattgagatttttgactgaattttttataattccaattatacccttaaataaatttttttatattaatgttatatt 34672635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 251
Target Start/End: Complemental strand, 5493103 - 5493028
Alignment:
Q  176 gatagagattttgagctgaactttttataatttcaattgtaccctgaaacaaattttcatatattaatgttatatt 251  Q
    ||||| ||||||| |||||| |||||||||||  |||| |||||| |||||||||||  |||| ||||||||||||    
T  5493103 gatagggattttgggctgaattttttataattataattatacccttaaacaaatttttctataataatgttatatt 5493028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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