View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19755_low_1 (Length: 887)
Name: NF19755_low_1
Description: NF19755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19755_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 290; Significance: 1e-162; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 176 - 533
Target Start/End: Complemental strand, 24998876 - 24998519
Alignment:
| Q |
176 |
aaaagtttgtaagaagaagttagaaactttgaagcaaataaacagatcacaaattaccatcaaatttcatatttgattttccagtttatgtgattgtaaa |
275 |
Q |
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| T |
24998876 |
aaaagtttgtaagaagaagttagaaactttgaagcaaataaacagatcaaaaattaccatcaaatttcatatttgattttccggtttatgtgattgtaaa |
24998777 |
T |
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| Q |
276 |
ctgcaattaagaaaagaaattatgtaaccatgtgtggtggttgtaattgtgatttccaaaccacaatnnnnnnnngtaaatcagacataaaagcttaaca |
375 |
Q |
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| T |
24998776 |
ctgcaattgagaaaagaaattatgtaaccgtgtgtggtagttgtaattgtgatttccaaaccacaataaaaaaaagtaaatcagacataaaaacttaaca |
24998677 |
T |
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| Q |
376 |
tcaattactctcatataacagtgaaattaaagagaaacttatcattaccttcattgttccccatgcccttcaaccaaatcactaaaagtatataacccct |
475 |
Q |
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| T |
24998676 |
tcaattactctcatataacagtgaaattaaagagaaacttatcattaccttcattgttccccatgcccttcaaccaaatcactaagagtatatagcccct |
24998577 |
T |
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| Q |
476 |
gtatactaacagagaacattaaactgtaaaacctataacactaaccatatttgcattg |
533 |
Q |
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| T |
24998576 |
ggataccgacagagaacattaaactgtaaaacctataacactaaccatatttgcattg |
24998519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 570 - 871
Target Start/End: Complemental strand, 24998480 - 24998172
Alignment:
| Q |
570 |
agacatgacaaaaatcgattaatcataatgaaaactggattgaataaatcaataaaatttcaacacaaaa--taattcataagnnnnnnnnnnc-----c |
662 |
Q |
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| T |
24998480 |
agacatgacaaaatttgattaatcataatgaaaactggattgaataaatcaataaaatttcaacacaaaaaataattcataagaaaaagaaaaaaaaaac |
24998381 |
T |
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| Q |
663 |
agaattatttagggcaacggtgatgccaatttccattgtgtaagcgtcatttgttctcatgcttgagtctcgccggttcatgtatgtgcagtgaacgcac |
762 |
Q |
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| T |
24998380 |
agaattttcgagggcaacggtgatgccaatttccattgcgtgagcgtcatttgttttcatgcttgagtctcgccggttcatgtatgtgtagtgaatgcac |
24998281 |
T |
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| Q |
763 |
ccttatctaccacactaatctccctccctacccgtttctttcttgttttcaatctcactgagagtccaccatgtaatgctgctccctcaagaaaaacaat |
862 |
Q |
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| T |
24998280 |
ccttatctaccacactaatctccctccctacccgtttcttttctgttttcaatctcactgagagtccaccatgtaatgctgctccctcgagaaaaacaat |
24998181 |
T |
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| Q |
863 |
ttaaccatg |
871 |
Q |
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| T |
24998180 |
ttaaccatg |
24998172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 737 - 783
Target Start/End: Original strand, 24998006 - 24998052
Alignment:
| Q |
737 |
ggttcatgtatgtgcagtgaacgcacccttatctaccacactaatct |
783 |
Q |
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| T |
24998006 |
ggttcatgtatgtacagtgagcgcacccttatccaccacactaatct |
24998052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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