View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19755_low_12 (Length: 535)
Name: NF19755_low_12
Description: NF19755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19755_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 490; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 16 - 517
Target Start/End: Original strand, 37119292 - 37119793
Alignment:
| Q |
16 |
atacacacaatgagatttacttggttcctttttgtagttaccccacttgaataatatctccttactagaagtgccaatgccacaagtgaaaagataaaca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37119292 |
atacacacaatgagatttacttggttcctttttgtagttaccccacttgaataatatctccttactagaagtgccaatgccacaagtgaaaagataaaca |
37119391 |
T |
|
| Q |
116 |
aagtagaaatcgacaaaaggctagatagaatactaagattggtgaagaaagcaacgatagcagtagcaataagcattgagatcgtagcattcataggtgt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37119392 |
aagtagaaatcgacaaaaggctagatagaatactaagattggtgaagaaagcaacgatagcagtagcaataagcattgagatcgtagcattcataggtgt |
37119491 |
T |
|
| Q |
216 |
tcctgttctttcatcaacaagagcaaaccaaggtggcatcatgtgagtacgcgcaatgtgtgttaaataacgagcttgaccaaccgcactaaccaacaaa |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37119492 |
tcctgttctttcatcaacaagagcaaaccaaggtggcatcatgtgagtacgtgcaatgtgtgttaagtaacgagcttgaccaaccgcactaaccaacaaa |
37119591 |
T |
|
| Q |
316 |
accgttgtcattcctttcaaagcacctaatgaaacaatgtacttagcccaatccattccaacagcactaaaagcaactgagaaaggagcatcagtatcaa |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37119592 |
accgttgtcattcctttcaaagcacctaatgaaacaatgtacttagcccaatccattccaacagcactaaaagcaactgagaaaggagcatcagtatcaa |
37119691 |
T |
|
| Q |
416 |
gttctttgtaattctgcataagacaaagtgttgctgctagtaagcaatatattgctgttgtaatcgtcattgatccaactagaccgataggaatgtctct |
515 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37119692 |
gttctttgtaattctgcataagacaaagtgttgctcctagtaagcaatatattgctgttgtaatcgtcattgatccaactagaccgataggaatgtctct |
37119791 |
T |
|
| Q |
516 |
ac |
517 |
Q |
| |
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|| |
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|
| T |
37119792 |
ac |
37119793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 18 - 517
Target Start/End: Original strand, 37111039 - 37111538
Alignment:
| Q |
18 |
acacacaatgagatttacttggttcctttttgtagttaccccacttgaataatatctccttactagaagtgccaatgccacaagtgaaaagataaacaaa |
117 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
37111039 |
acacacaatgagatttacttggttcccttttgtagttacctcacttgaataatatctcctcactagaagtgccaatgccacaagcgaaaagataaacaaa |
37111138 |
T |
|
| Q |
118 |
gtagaaatcgacaaaaggctagatagaatactaagattggtgaagaaagcaacgatagcagtagcaataagcattgagatcgtagcattcataggtgttc |
217 |
Q |
| |
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|||| ||||||||| ||| | |||||||| | ||||| ||| |||||||||||||||||||| || |||||||||||| ||||||||||||||||||| |
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| T |
37111139 |
gtagcaatcgacaagaggttcgatagaatcccaagatcggtaaagaaagcaacgatagcagtcgctgcaagcattgagattgtagcattcataggtgttc |
37111238 |
T |
|
| Q |
218 |
ctgttctttcatcaacaagagcaaaccaaggtggcatcatgtgagtacgcgcaatgtgtgttaaataacgagcttgaccaaccgcactaaccaacaaaac |
317 |
Q |
| |
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||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||| |||| |||||||||||| |
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| T |
37111239 |
ctgttctttcatcaacatgagcaaaccaaggcggcatcatgtgagtacgtgcaatgtgagttaaataacgagcttgaccaacagcaccaaccaacaaaac |
37111338 |
T |
|
| Q |
318 |
cgttgtcattcctttcaaagcacctaatgaaacaatgtacttagcccaatccattccaacagcactaaaagcaactgagaaaggagcatcagtatcaagt |
417 |
Q |
| |
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||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||| |
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| T |
37111339 |
cgttgtcattccttttaaagcgcctaatgaaacaatgtacttagcccaatccattccaacagcactaaaagcaacagagaaaggagcatcaacatttagt |
37111438 |
T |
|
| Q |
418 |
tctttgtaattctgcataagacaaagtgttgctgctagtaagcaatatattgctgttgtaatcgtcattgatccaactagaccgataggaatgtctctac |
517 |
Q |
| |
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||||||||||||||||||||||| ||||||||||| ||||||||||| ||| |||||||||||||||||| ||||||||||| || ||||||||||||| |
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| T |
37111439 |
tctttgtaattctgcataagacacagtgttgctgccagtaagcaataaattattgttgtaatcgtcattgaaccaactagaccaattggaatgtctctac |
37111538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 121 - 467
Target Start/End: Complemental strand, 37136856 - 37136510
Alignment:
| Q |
121 |
gaaatcgacaaaaggctagatagaatactaagattggtgaagaaagcaacgatagcagtagcaataagcattgagatcgtagcattcataggtgttcctg |
220 |
Q |
| |
|
||||||||||| ||| | || ||||||| ||||| ||||| || ||||| | || |||||| ||| ||||| || |||||||||| |||||| || | |
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| T |
37136856 |
gaaatcgacaataggtttgaaagaatacgaagatcagtgaaaaatgcaaccacagaagtagctgtaaccattgcaattgtagcattcaaaggtgtcccgg |
37136757 |
T |
|
| Q |
221 |
ttctttcatcaacaagagcaaaccaaggtggcatcatgtgagtacgcgcaatgtgtgttaaataacgagcttgaccaaccgcactaaccaacaaaaccgt |
320 |
Q |
| |
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|| | |||| |||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| | ||| || || ||||||||||||| || |
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|
| T |
37136756 |
ttttctcatgaacaagagcaaaccaaggaggcatcatgtgagtacgagcaatgtgagttaaataacgtgaggcaccgacaacattaaccaacaaaacagt |
37136657 |
T |
|
| Q |
321 |
tgtcattcctttcaaagcacctaatgaaacaatgtacttagcccaatccattccaacagcactaaaagcaactgagaaaggagcatcagtatcaagttct |
420 |
Q |
| |
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|||||||| ||||| || || |||| ||||||||| |||||||| || |||||||| |||||| ||||| || || || |||| ||||| | | |
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| T |
37136656 |
cgtcattcccttcaatgctcccaatgcaacaatgtatttagcccatccccatccaacagaactaaatgcaaccgaaaatggtgcattgacatcaattgtt |
37136557 |
T |
|
| Q |
421 |
ttgtaattctgcataagacaaagtgttgctgctagtaagcaatatat |
467 |
Q |
| |
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||||| ||||||||||| || ||||||| ||||||| |||||||||| |
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|
| T |
37136556 |
ttgtagttctgcataaggcatagtgttgttgctagtgagcaatatat |
37136510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 289 - 380
Target Start/End: Complemental strand, 10681195 - 10681104
Alignment:
| Q |
289 |
gcttgaccaaccgcactaaccaacaaaaccgttgtcattcctttcaaagcacctaatgaaacaatgtacttagcccaatccattccaacagc |
380 |
Q |
| |
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||||||||||| |||| ||| | ||||| | |||||||||||||| ||||| |||| |||||| ||||||||||| | |||||||||||| |
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| T |
10681195 |
gcttgaccaacagcaccaacaagtaaaacactagtcattcctttcaatgcaccaaatgcaacaatatacttagcccatttcattccaacagc |
10681104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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