View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19755_low_13 (Length: 497)
Name: NF19755_low_13
Description: NF19755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19755_low_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 261 - 480
Target Start/End: Complemental strand, 11517396 - 11517177
Alignment:
| Q |
261 |
tttactggtagcttaccttggtaacgtaatccatctcaatgaattggaaatgaaagccaacactaccaaaaaggggagctacaaaagaacatgcacggga |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11517396 |
tttactggtagcttaccttggtaacgtaatccatctcaatgaactggaaatgaaagccaacactaccaaaaaggggagctacaaaagaacatgcacggga |
11517297 |
T |
|
| Q |
361 |
aaaagcagcaacctcgatcatattttcgttgacgatggcatttgctagctctttgaatgcatctgcgattttagcgagatgcttttcatcgactgctgtc |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11517296 |
aaaagcagcaacctcgatcatattttcgttgacgatggcatttgctagctctttgaatgcatctgcgattttagcgagatgcttttcatcgactgctgtc |
11517197 |
T |
|
| Q |
461 |
gtggaagccactcttcttcc |
480 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
11517196 |
gtggaagccactcttcttcc |
11517177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 11517625 - 11517425
Alignment:
| Q |
20 |
caagtatgtatgc-ttaccaacactttcagattaaatacttatttggtatgtgtgtttgtgtttaacattgacacaacactgacacatatacatatggtt |
118 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11517625 |
caagtatgtatgcgttaccaacactt-cagattaaagacgtatttggtatgtgtgtttgtgtttaacattgacacaacactgacacatatacatatggtt |
11517527 |
T |
|
| Q |
119 |
gtaattaatctatttcatctttttaaattattactgtgtccggcgtacatgtatgagtaagtgtatatctcaacaaataagatcacatattcacatacat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
11517526 |
ataattaatctatttcatctttttaaattattactgt---cggcgtacatgtatgagtaagtgtatatatcaacaaataagatcccatattcacatacat |
11517430 |
T |
|
| Q |
219 |
gttac |
223 |
Q |
| |
|
||||| |
|
|
| T |
11517429 |
gttac |
11517425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University