View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19755_low_15 (Length: 472)
Name: NF19755_low_15
Description: NF19755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19755_low_15 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 21 - 472
Target Start/End: Complemental strand, 38582658 - 38582207
Alignment:
| Q |
21 |
acgcccaccgtcaattctacagaaactgcgaaatttcaggcacagtggatttcattttcggctatgcatcaacagtaatacagaactcaaagatagtagt |
120 |
Q |
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| T |
38582658 |
acgcccaccgtcaattctacagaaactgcgaaatttcaggcacagtggatttcattttcggctatgcatcaacagtaatacagaactcaaagatagtagt |
38582559 |
T |
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| Q |
121 |
gcgaaaacccgagccaaatcaacaaaacataattgtagctgatggaacagtccaaaagaacatgccaacaggagtagtacttcagaattgtgaaatcatg |
220 |
Q |
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| T |
38582558 |
gcgaaaacccgaggcaaatcaacaaaacataattgtagctgatggaacagtccaaaagaacatgccaacaggagtagtacttcagaattgtgaaatcatg |
38582459 |
T |
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| Q |
221 |
ccagagccagcactacaacctgatagattgaaggttcgatcgtttttagcaagaccatggaaggcatattctagggcaatatttatggaaaataccattg |
320 |
Q |
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| T |
38582458 |
ccagagccagcactacaacctgatagattgaaggttcgatcgtttttagcaagaccatggaaggcatattctagggcaatatttatggaaaataccattg |
38582359 |
T |
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| Q |
321 |
gtgatttaattcaaccagatggatttcttccttgggcagggactcaattccttgatacatgtttccttgctgagtatgctaacactggaccaggttcaaa |
420 |
Q |
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| T |
38582358 |
gtgatttaattcaaccagatggatttcttccttgggcagggactcaattccttgatacatgtttctttgctgagtatgctaacactggaccaggttcaaa |
38582259 |
T |
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| Q |
421 |
tgttcaagcaagagttaagtggggaaagggtgttcttagcaaagctgatgca |
472 |
Q |
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| T |
38582258 |
tgttcaagcaagagttaagtggggaaagggtgttcttagcaaagctgatgca |
38582207 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 193
Target Start/End: Original strand, 45310371 - 45310409
Alignment:
| Q |
155 |
gtagctgatggaacagtccaaaagaacatgccaacagga |
193 |
Q |
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| T |
45310371 |
gtagctgatggaacagaacaaaagaacatgccaacagga |
45310409 |
T |
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