View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19755_low_16 (Length: 471)
Name: NF19755_low_16
Description: NF19755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19755_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 5e-88; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 274 - 453
Target Start/End: Complemental strand, 52035589 - 52035409
Alignment:
| Q |
274 |
aatgaaccactttattctctctgaccaatttcaacataagactgcctcaattcattgttctacc-atgcaattccttggtgcttttgacatggtttttaa |
372 |
Q |
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| T |
52035589 |
aatgaaccactttattgtctctgaccaatttcaacataagactgcctcaattcattgttctacccatgcaattccttggtgcttttgacatggtttttaa |
52035490 |
T |
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| Q |
373 |
cttaaaatcatagataattaaatttaaaatgagagatgaggagagttgcaaatgattagaatataaacggtcacaacaatt |
453 |
Q |
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| T |
52035489 |
cttaaaatcatagataattaaatttaaaatgagagatgatgagagttgcaaatgattagaatataaacggtcacaacaatt |
52035409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 52035798 - 52035632
Alignment:
| Q |
1 |
ttctctcccgacaatgtatatcatagctcatacggcaagttgagtcgagttaaaaatgacatgagatgcttttgatcacaatattgacaaaacgatgcaa |
100 |
Q |
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| T |
52035798 |
ttctctcccgacaatgtatatcatcgctcatacggcaagttgagtcgagttaaaaatgacatgagatgcttttgatcacaatattgacaaaacgatgcaa |
52035699 |
T |
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| Q |
101 |
tgagtgtgtattaaattttagctactttatttatttcattctctaaaaaatgacacttttttaaaaa |
167 |
Q |
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| T |
52035698 |
tgagtgtgtattaaattttagctactttatttatttcattctctaaaaaatgacacttttgtaaaaa |
52035632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 197 - 248
Target Start/End: Complemental strand, 52035641 - 52035590
Alignment:
| Q |
197 |
tttgtaaaaattgaatgaaagattgtgaaagaaaaagcatattattcgtatc |
248 |
Q |
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| T |
52035641 |
tttgtaaaaattgaatgaaagattgtgaaagaaaaagcatattattcgtatc |
52035590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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