View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19755_low_17 (Length: 468)
Name: NF19755_low_17
Description: NF19755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19755_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 9 - 453
Target Start/End: Original strand, 8180174 - 8180618
Alignment:
| Q |
9 |
attatactatacgtattaattagctataagttataactaaccaaacccatttgttttgtttctgaaatcaatcaactttgtactttttggaaggaaaatc |
108 |
Q |
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| T |
8180174 |
attatactatacgtattaattagctataagttataactaaccaaacccatttgttttgtttctgaaatcaatcaactttgtactttttggaaggaaaatc |
8180273 |
T |
|
| Q |
109 |
aattcaatatggatgaagtggagctagcttgtgagtctagcttggaatgcaagaaaaccaaagaggaaggaacgtcgaaaaaacaaagtaaagtggagag |
208 |
Q |
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| T |
8180274 |
aattcaatatggatgaagtggagctagcttgtgagtctagcttggaatgcaagaaaaccaaagaggaaggaacgtcgaaaaaacaaagtaaagtggagag |
8180373 |
T |
|
| Q |
209 |
tgtttcgttttttggattgtttggtgcagctgatagaactgattatgtgttaatgttccttggaagtgttggttcttttgttcatggtgctgctcttcct |
308 |
Q |
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| T |
8180374 |
tgtttcgttttttggattgtttggtgcagccgatagaactgattatgtgttaatgttccttggaagtgttggttcttttgttcatggtgctgctcttcct |
8180473 |
T |
|
| Q |
309 |
gtttcctttgttttgtttggtcgtatgattgattctctcggacacctttctagcaatcctcacaaattttcctcacaaatttctcaggtaaaaacaacat |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8180474 |
gtttcctttgttttgtttggtcgtatgattgattctctcggacacctttctagcaatcctcacaaattttcctcacaaatttctcaggtaaaaacaacat |
8180573 |
T |
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| Q |
409 |
caaccatatttatttgattatgcaaagagagagacaaataaagtg |
453 |
Q |
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| T |
8180574 |
caaccatatttatttgattatgcaaagagagagacaaataaagtg |
8180618 |
T |
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