View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19755_low_18 (Length: 463)
Name: NF19755_low_18
Description: NF19755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19755_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 20 - 452
Target Start/End: Original strand, 7164237 - 7164669
Alignment:
| Q |
20 |
aaaaatcattagcagaaccaagagaaaatcaaaacatctagtaggaaagcacacaaccagaagacaagtcaaacaatgataaacatgagaagctgtacag |
119 |
Q |
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| T |
7164237 |
aaaaatcattagcagaaccaagagaaaatcaaaacatctagtaggaaagcacacaaccagaagacaagtcgaacaatgataaacatgagaagctgtacag |
7164336 |
T |
|
| Q |
120 |
ccgagaccccgaaccactttaatgtttcacaccaaatcgcggcaagaatgaaacaattaaaaaatacatgattcgcggtttcagcatatccatatccacc |
219 |
Q |
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| T |
7164337 |
ccgagaccccgaaccactttaatgtttcacaccaaatcgcggcaagaatgaaacaattaaaaaatacatgattcgcggtttcagcatatccatatccacc |
7164436 |
T |
|
| Q |
220 |
aacacaaagtaaagaggaatttaattgcacccctctatggctaaggttttccttggttggtaatctattttggaaaagcctttaaaccaatgccgacatt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7164437 |
aacacaaagtaaagaggaatttaattgcacccctctatggctaaggttttccttggttggtaatctattttggaaaagcctttaaaccaatgccgacatt |
7164536 |
T |
|
| Q |
320 |
ctcaacggaatcaatggactccaaacatctttagcccaaaccacttcttcagcatcgtcctcactgaaacaataataagctaccttaactgtgtacttcg |
419 |
Q |
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|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7164537 |
ctcaacggaatcaacgggctccaaacatctttagcccaaaccacttcttcagcatcgtcctcactgaaacaataataagctaccttaactgtgtacttcg |
7164636 |
T |
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| Q |
420 |
agtcccgcccacttccaagttccaacaattcat |
452 |
Q |
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| T |
7164637 |
agtcccgcccacttccaagttccaacaattcat |
7164669 |
T |
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