View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19755_low_21 (Length: 453)

Name: NF19755_low_21
Description: NF19755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19755_low_21
NF19755_low_21
[»] chr7 (1 HSPs)
chr7 (18-446)||(46332832-46333261)
[»] chr3 (5 HSPs)
chr3 (125-206)||(28576722-28576803)
chr3 (110-161)||(21110480-21110531)
chr3 (117-161)||(32166200-32166244)
chr3 (114-160)||(31207834-31207880)
chr3 (126-170)||(30367627-30367671)
[»] chr4 (4 HSPs)
chr4 (133-213)||(13307891-13307971)
chr4 (125-183)||(41989570-41989628)
chr4 (124-161)||(8457930-8457967)
chr4 (125-161)||(2976700-2976736)
[»] chr2 (1 HSPs)
chr2 (110-161)||(30356782-30356833)
[»] chr5 (1 HSPs)
chr5 (105-167)||(32428937-32428999)
[»] chr1 (2 HSPs)
chr1 (108-181)||(31667414-31667487)
chr1 (125-161)||(29230071-29230107)
[»] chr8 (1 HSPs)
chr8 (127-183)||(13844591-13844647)
[»] chr6 (1 HSPs)
chr6 (105-161)||(18803233-18803289)


Alignment Details
Target: chr7 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 18 - 446
Target Start/End: Original strand, 46332832 - 46333261
Alignment:
Q  18 tttacattggcatgcctgtaagtgttcaattctgcattgattt-atgttttcttgtatattggtacaaattatgatctatgaagcttagacactgacatg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46332832 tttacattggcatgcctgtaagtgttcaattctgcattgattttatgttttcttgtatattggtacaaattatgatctatgaagcttagacactgacatg 46332931  T
Q  117 ttgacagtggtaatagtttgagaaaatgacacaattgaatgtaattaaatgttttggtgtcggacacaggcatgtgtcagacaccagacatgccttccaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  46332932 ttgacagtggtaatagtttgagaaaatgacacaattgaatgtaattaaatgttttggtgtcggacactggcatgtgtcagacaccagacatgccttccaa 46333031  T
Q  217 gtgtggtgcttcagagattatcatgtttgcgactgtagtgcttgtagttgtattattactgagaggcttgagtttcaaacttatacctattatccctctt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46333032 gtgtggtgcttcagagattatcatgtttgcgactgtagtgcttgtagttgtattattactgagaggcttgagtttcaaacttatacctattatccctctt 46333131  T
Q  317 aatgctctgaattgattaatccannnnnnnnaatgggaattgcaatttgtacaaactgttatgactgtttctagtttctacctatcagttggtgccggct 416  Q
    |||||||||||||||||||||||        |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  46333132 aatgctctgaattgattaatccattttttttaatgggaattgcaatttgtacaaattgttatgactgtttctagtttctacctatcagttggtgccggct 46333231  T
Q  417 gtcacggagcttgttattgcagagcctatg 446  Q
    ||||||||||||||||||||||||| ||||    
T  46333232 gtcacggagcttgttattgcagagcttatg 46333261  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 125 - 206
Target Start/End: Original strand, 28576722 - 28576803
Alignment:
Q  125 ggtaatagtttgagaaaatgacacaattgaatgtaattaaatgttttggtgtcggacacaggcatgtgtcagacaccagaca 206  Q
    ||||||| ||||||||||||||| ||||||||||||||| |||| | ||| || || ||| |||||||||||||||| ||||    
T  28576722 ggtaataatttgagaaaatgacaaaattgaatgtaattacatgtgtcggtatcagaaacaagcatgtgtcagacaccggaca 28576803  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 110 - 161
Target Start/End: Complemental strand, 21110531 - 21110480
Alignment:
Q  110 tgacatgttgacagtggtaatagtttgagaaaatgacacaattgaatgtaat 161  Q
    ||||||||||||| | |||||| ||||||||||||||| |||||||||||||    
T  21110531 tgacatgttgacactcgtaataatttgagaaaatgacataattgaatgtaat 21110480  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 161
Target Start/End: Complemental strand, 32166244 - 32166200
Alignment:
Q  117 ttgacagtggtaatagtttgagaaaatgacacaattgaatgtaat 161  Q
    |||||| |||||||| ||||||||||||||| |||||||||||||    
T  32166244 ttgacactggtaataatttgagaaaatgacataattgaatgtaat 32166200  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 31207834 - 31207880
Alignment:
Q  114 atgttgacagtggtaatagtttgagaaaatgacacaattgaatgtaa 160  Q
    ||||||||| |||||||  ||||||||||||||| ||||||||||||    
T  31207834 atgttgacaatggtaattatttgagaaaatgacataattgaatgtaa 31207880  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 30367671 - 30367627
Alignment:
Q  126 gtaatagtttgagaaaatgacacaattgaatgtaattaaatgttt 170  Q
    |||||| ||| ||||||||||| ||||||||||||| ||||||||    
T  30367671 gtaataatttaagaaaatgacataattgaatgtaatcaaatgttt 30367627  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 13307891 - 13307971
Alignment:
Q  133 tttgagaaaatgacacaattgaatgtaattaaatgttttggtgtcggacacaggcatgtgtcagacacca-gacatgccttc 213  Q
    ||||||||||||||| |||| |||||||| | | || |||||||||||||| | || ||||||||||||| |||||||||||    
T  13307891 tttgagaaaatgacataattcaatgtaatcacaagtgttggtgtcggacac-gacacgtgtcagacaccatgacatgccttc 13307971  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 183
Target Start/End: Original strand, 41989570 - 41989628
Alignment:
Q  125 ggtaatagtttgagaaaatgacacaattgaatgtaattaaatgttttggtgtcggacac 183  Q
    ||||||| ||| ||||||||||| |||||||||||||||| ||| || ||||| |||||    
T  41989570 ggtaataatttaagaaaatgacataattgaatgtaattaactgtgtttgtgtctgacac 41989628  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 161
Target Start/End: Original strand, 8457930 - 8457967
Alignment:
Q  124 tggtaatagtttgagaaaatgacacaattgaatgtaat 161  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  8457930 tggtaataatttgagaaaatgacataattgaatgtaat 8457967  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 2976700 - 2976736
Alignment:
Q  125 ggtaatagtttgagaaaatgacacaattgaatgtaat 161  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  2976700 ggtaataatttgagaaaatgacataattgaatgtaat 2976736  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 161
Target Start/End: Original strand, 30356782 - 30356833
Alignment:
Q  110 tgacatgttgacagtggtaatagtttgagaaaatgacacaattgaatgtaat 161  Q
    ||||||||||||| ||||| ||||||||||||||| || || ||||||||||    
T  30356782 tgacatgttgacaatggtattagtttgagaaaatgtcaaaactgaatgtaat 30356833  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 167
Target Start/End: Complemental strand, 32428999 - 32428937
Alignment:
Q  105 gacactgacatgttgacagtggtaatagtttgagaaaatgacacaattgaatgtaattaaatg 167  Q
    |||||||||||| ||||| || ||||| ||||||||| ||||| |||| |||||| |||||||    
T  32428999 gacactgacatggtgacactgataataatttgagaaagtgacataattcaatgtagttaaatg 32428937  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 181
Target Start/End: Original strand, 31667414 - 31667487
Alignment:
Q  108 actgacatgttgacagtggtaatagtttgagaaaatgacacaattgaatgtaattaaatgttttggtgtcggac 181  Q
    ||||||||||  ||| |||||||| ||| ||||||||||| |||| |||||||| | |||| | ||||||||||    
T  31667414 actgacatgtcaacactggtaataattttagaaaatgacataattaaatgtaatcacatgtgtcggtgtcggac 31667487  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 29230071 - 29230107
Alignment:
Q  125 ggtaatagtttgagaaaatgacacaattgaatgtaat 161  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  29230071 ggtaataatttgagaaaatgacataattgaatgtaat 29230107  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 13844647 - 13844591
Alignment:
Q  127 taatagtttgagaaaatgacacaattgaatgtaattaaatgttttggtgtcggacac 183  Q
    ||||| ||||||||||| ||| |||||| |||||||| |||| | ||||||||||||    
T  13844647 taataatttgagaaaatcacataattgagtgtaattatatgtgtcggtgtcggacac 13844591  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 161
Target Start/End: Original strand, 18803233 - 18803289
Alignment:
Q  105 gacactgacatgttgacagtggtaatagtttgagaaaatgacacaattgaatgtaat 161  Q
    |||| ||||||||||| | |||||||  ||||||||||| ||| |||||||||||||    
T  18803233 gacattgacatgttgatattggtaattatttgagaaaattacataattgaatgtaat 18803289  T

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