View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19755_low_23 (Length: 430)

Name: NF19755_low_23
Description: NF19755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19755_low_23
NF19755_low_23
[»] chr7 (9 HSPs)
chr7 (1-412)||(11242931-11243342)
chr7 (48-289)||(11267804-11268038)
chr7 (1-54)||(11267553-11267606)
chr7 (359-412)||(11268299-11268352)
chr7 (292-351)||(11281891-11281950)
chr7 (292-351)||(11268248-11268307)
chr7 (359-408)||(11281850-11281899)
chr7 (224-270)||(1864993-1865039)
chr7 (208-272)||(4873738-4873801)
[»] chr1 (5 HSPs)
chr1 (215-412)||(12726547-12726734)
chr1 (183-412)||(27319076-27319306)
chr1 (156-410)||(898461-898713)
chr1 (211-267)||(3362972-3363027)
chr1 (197-273)||(26290097-26290173)
[»] chr3 (2 HSPs)
chr3 (1-150)||(435409-435558)
chr3 (159-374)||(16998454-16998670)
[»] chr8 (2 HSPs)
chr8 (159-398)||(9797777-9798011)
chr8 (296-379)||(33167886-33167971)
[»] chr2 (3 HSPs)
chr2 (299-400)||(21515842-21515943)
chr2 (197-267)||(21511328-21511397)
chr2 (235-273)||(35407066-35407104)
[»] chr4 (4 HSPs)
chr4 (177-400)||(17465400-17465623)
chr4 (224-270)||(11376905-11376951)
chr4 (318-375)||(8898987-8899044)
chr4 (329-373)||(12272809-12272853)
[»] chr5 (2 HSPs)
chr5 (235-400)||(42687054-42687222)
chr5 (216-264)||(19222611-19222659)


Alignment Details
Target: chr7 (Bit Score: 380; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Complemental strand, 11243342 - 11242931
Alignment:
Q  1 gtaatatcatttaataagttttgtctacttgtagtcttgtacaatatcatcatgtaacggcggatattggcatgatttgtttgaagcctagtattttgta 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  11243342 gtaatatcatttaataagttttgtctacttgtagtctcgtacaatatcatcatgtaatggcggatattgacatgatttgtttgaagcctagtattttgta 11243243  T
Q  101 taacgttggtccccaacgagttagaaatatattatttttctatgtggcaattggcaaatgatacaaatttgtaagtatacgattctatctagtagtaaag 200  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||    
T  11243242 taacgttggtccccaacgagttagaaatatattattttcctatgtggcaactggcaaatgatacaaattcgcaagtatacgattctatctagtagtaaag 11243143  T
Q  201 attatcatctacagagagttatatgtaattaacgatcttgtttttaattatgattagctgaaaagatcaagttggttggtttcataatttgtttgttaaa 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11243142 attatcatctacagagagttatatgtaattaacgatcttgtttttaattatgattagctgaaaagatcaagttggttggtttcataatttttttgttaaa 11243043  T
Q  301 attcagattaaaaggcatcatgggattgttggtttcatcttaatgtcaaatcataaacatttcaaatctatttctatatctttaagttaaattcttttct 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11243042 attcagattaaaaggcatcatgggattgttggtttcatcttaatgtcaaatcataaacatttcaaatctatttctatatctttaagttaaattcttttct 11242943  T
Q  401 taagacaagatt 412  Q
    ||||||||||||    
T  11242942 taagacaagatt 11242931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 48 - 289
Target Start/End: Original strand, 11267804 - 11268038
Alignment:
Q  48 catcatgtaacggcggatattggcatgatttgtttgaagcctagtattttgtataacgttggtccccaacgagttagaaatatattatttttctatgtgg 147  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||| | |||||| ||||||||||||||||||||| ||||||    
T  11267804 catcatgtaacggcttatattggcatgatttgtttgaagcctagtattttgtataatgttggcctccaacgggttagaaatatattatttttcaatgtgg 11267903  T
Q  148 caattggcaaatgatacaaatttgtaagtatacgattctatctagtagtaaagattatcatctacagagagttatatgtaattaacgatcttgtttttaa 247  Q
    |       |||||||||||||  | ||||||| | |||||||  ||||||||||||||| || ||| ||||||||||||||||| |||| |||||||| |    
T  11267904 c-------aaatgatacaaatacgcaagtatagggttctatcgtgtagtaaagattatcgtccacaaagagttatatgtaattatcgattttgtttttta 11267996  T
Q  248 ttatgattagctgaaaagatcaagttggttggtttcataatt 289  Q
    ||||| ||||||||||||||||||||||||||||| ||||||    
T  11267997 ttatgcttagctgaaaagatcaagttggttggttttataatt 11268038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 11267553 - 11267606
Alignment:
Q  1 gtaatatcatttaataagttttgtctacttgtagtcttgtacaatatcatcatg 54  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11267553 gtaatatcatttaataagttttgtctacttgtagtcttctacaatatcatcatg 11267606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 359 - 412
Target Start/End: Original strand, 11268299 - 11268352
Alignment:
Q  359 atttcaaatctatttctatatctttaagttaaattcttttcttaagacaagatt 412  Q
    ||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||    
T  11268299 atttcaaatttatttctctatctttaaattaaattcttttcttaagacaagatt 11268352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 292 - 351
Target Start/End: Complemental strand, 11281950 - 11281891
Alignment:
Q  292 tttgttaaaattcagattaaaaggcatcatgggattgttggtttcatcttaatgtcaaat 351  Q
    |||||||||||||| || ||||||  ||||||||||||||||||||||||||| ||||||    
T  11281950 tttgttaaaattcaaatcaaaaggtgtcatgggattgttggtttcatcttaatttcaaat 11281891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 292 - 351
Target Start/End: Original strand, 11268248 - 11268307
Alignment:
Q  292 tttgttaaaattcagattaaaaggcatcatgggattgttggtttcatcttaatgtcaaat 351  Q
    |||||||||||||| || ||||||  | ||||||||||||||||||||||||| ||||||    
T  11268248 tttgttaaaattcaaatcaaaaggtgttatgggattgttggtttcatcttaatttcaaat 11268307  T

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Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 359 - 408
Target Start/End: Complemental strand, 11281899 - 11281850
Alignment:
Q  359 atttcaaatctatttctatatctttaagttaaattcttttcttaagacaa 408  Q
    ||||||||| ||||| | ||||||||| ||||||||||||||||||||||    
T  11281899 atttcaaatttatttttctatctttaaattaaattcttttcttaagacaa 11281850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 270
Target Start/End: Complemental strand, 1865039 - 1864993
Alignment:
Q  224 tgtaattaacgatcttgtttttaattatgattagctgaaaagatcaa 270  Q
    |||||||| |||| || ||| ||||||||||||||||||||||||||    
T  1865039 tgtaattaccgattttctttctaattatgattagctgaaaagatcaa 1864993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 272
Target Start/End: Complemental strand, 4873801 - 4873738
Alignment:
Q  208 tctacagagagttatatgtaattaacgatcttgtttttaattatgattagctgaaaagatcaagt 272  Q
    ||||||||||||||| ||||||||  ||| | ||||| ||| |||||||||||||||||| ||||    
T  4873801 tctacagagagttat-tgtaattacagatttcgttttcaatgatgattagctgaaaagattaagt 4873738  T

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Target: chr1 (Bit Score: 98; Significance: 4e-48; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 215 - 412
Target Start/End: Original strand, 12726547 - 12726734
Alignment:
Q  215 agagttatatgtaattaacgatcttgtttttaattatgattagctgaaaagatcaagttggttggtttcataatttgtttgttaaaattcagattaaaag 314  Q
    ||||||||||||||||| | ||||| ||||||||| ||||| |||||||||||||| ||||||||||| |||||   |||||||||||||||||||||||    
T  12726547 agagttatatgtaattatcaatcttatttttaattgtgattggctgaaaagatcaaattggttggttttataatcgttttgttaaaattcagattaaaag 12726646  T
Q  315 gcatcatgggattgttggtttcatcttaatgtcaaatcataaacatttcaaatctatttctatatctttaagttaaattcttttcttaagacaagatt 412  Q
    || ||||||||    ||||||||||||||| || |||      |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12726647 gcgtcatggga----tggtttcatcttaatatcgaat------cattccaaatctatttctctatctttaagttaaattcttttcttaagacaagatt 12726734  T

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Target: chr1; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 183 - 412
Target Start/End: Complemental strand, 27319306 - 27319076
Alignment:
Q  183 ttctatctagtagtaaa-gattatc-atctacagagagttatatgtaattaacgatcttgtttttaattatgattagctgaaaagatcaagttggttggt 280  Q
    ||||||| ||||||||| ||||||| ||| | ||||||||| |  |||||| |||| ||| ||||| || |||||||||||||| || ||||||||||||    
T  27319306 ttctatcgagtagtaaaagattatcgatccatagagagttaaac-taattatcgattttgattttagttttgattagctgaaaatattaagttggttggt 27319208  T
Q  281 ttcataatttgtttgttaaaattcagattaaaaggcatcatgggattgttggtttcatcttaatgtcaaatcataaacatttcaaatctatttctatatc 380  Q
    || ||||||  |||||| |||| || |||||||||| |||||| ||  ||||||||||||||||||| ||||||||||||| ||||| ||||||| ||||    
T  27319207 tttataattgctttgttcaaatccaaattaaaaggcttcatggaatcattggtttcatcttaatgtctaatcataaacattccaaatttatttctctatc 27319108  T
Q  381 tttaagttaaattcttttcttaagacaagatt 412  Q
    |||||||||||||||||||| |||| ||||||    
T  27319107 tttaagttaaattcttttctaaagaaaagatt 27319076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 156 - 410
Target Start/End: Complemental strand, 898713 - 898461
Alignment:
Q  156 aaatgatacaaatttgtaagtatacgattctatctagtagtaaagat--tatcatctacagagagttatatgtaattaacgatcttgtttttaattatga 253  Q
    ||||||||| ||| |||| || |||| ||||||| | ||||||| ||  |||| || | ||||||||| ||  ||||| ||||||||||||||||| |||    
T  898713 aaatgatacgaatctgtatgtgtacggttctatcgattagtaaaaatattatcttccatagagagttaaat--aattaccgatcttgtttttaattgtga 898616  T
Q  254 ttagctgaaaagatcaagttggttggtttcataatttgtttgttaaaattcagattaaaaggcatcatgggattgttggtttcatcttaatgtcaaatca 353  Q
    |||| ||| ||||| || || |||||||| ||||   ||| ||||||||||| |||||||||   |||||||| |||| | ||||||||||||||| |||    
T  898615 ttagttgacaagataaaatttgttggttttataaccggtt-gttaaaattcaaattaaaaggtgccatgggatcgttgttctcatcttaatgtcaattca 898517  T
Q  354 taaacatttcaaatctatttctatatctttaagttaaattcttttcttaagacaaga 410  Q
    |||||||| ||| ||||||||| ||| |||||||||||||||||||| |||||||||    
T  898516 taaacattccaagtctatttctctat-tttaagttaaattcttttctaaagacaaga 898461  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 267
Target Start/End: Original strand, 3362972 - 3363027
Alignment:
Q  211 acagagagttatatgtaattaacgatcttgtttttaattatgattagctgaaaagat 267  Q
    |||||||||||| |||||||| |||| | ||||| |||| |||||||||||||||||    
T  3362972 acagagagttat-tgtaattaccgatttcgttttcaattgtgattagctgaaaagat 3363027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 273
Target Start/End: Original strand, 26290097 - 26290173
Alignment:
Q  197 aaagattatcatctacagagagttatatgtaattaacgatcttgtttttaattatgattagctgaaaagatcaagtt 273  Q
    |||||||||| || ||| | |||||||||||| ||  ||| |||||||||||  | ||||||||||||| |||||||    
T  26290097 aaagattatcgtccacataaagttatatgtaagtattgattttgtttttaatggtaattagctgaaaagttcaagtt 26290173  T

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Target: chr3 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 435409 - 435558
Alignment:
Q  1 gtaatatcatttaataagttttgtctacttgtagtcttgtacaatatcatcatgtaacggcggatattggcatgatttgtttgaagcctagtattttgta 100  Q
    |||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||  || || ||||| |||||||||||||||||||||||||    
T  435409 gtaatatcatataataagctttgtttacttgtagtcttgtacaatatcatcatgtaacggctcatttttgcatggtttgtttgaagcctagtattttgta 435508  T
Q  101 taacgttggtccccaacgagttagaaatatattatttttctatgtggcaa 150  Q
    ||| |||||||||||| |||| | ||||||||||||||  ||||||||||    
T  435509 taatgttggtccccaatgagtcataaatatattattttcttatgtggcaa 435558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 159 - 374
Target Start/End: Original strand, 16998454 - 16998670
Alignment:
Q  159 tgatacaaatttgtaagtatacgattctatctagtagtaaa-gattatcat-ctacagagagttatatgtaattaacgatcttgtttttaattatgatta 256  Q
    ||||||||||| | |||||||| ||||||||  |||||||| ||||||  | | |||  ||||||||||||| || | |||||||||| | || ||||||    
T  16998454 tgatacaaattcgcaagtatacaattctatcgcgtagtaaaagattattgttccacaatgagttatatgtaactaccaatcttgtttt-agttttgatta 16998552  T
Q  257 gctgaaaagatcaagttggttggtttcataatttgtttgttaaaattcagattaaaaggcatcatgggattgttggtttcatcttaatgtcaaatcataa 356  Q
    |||||||| || |||||||||||||| |||| |  || ||||||||||| ||||||| |  ||||| |||  ||||||| ||| ||||||||||||||||    
T  16998553 gctgaaaaaattaagttggttggttttataaatgcttggttaaaattcatattaaaatgtgtcatgtgatcattggttttatcataatgtcaaatcataa 16998652  T
Q  357 acatttcaaatctatttc 374  Q
    ||||| ||||||||||||    
T  16998653 acattccaaatctatttc 16998670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 159 - 398
Target Start/End: Original strand, 9797777 - 9798011
Alignment:
Q  159 tgatacaaatttgtaagtatacgattctatctagtagtaaa-gattatca-tctacagagagttatatgtaattaacgatcttgtttttaattatgatta 256  Q
    |||||| |||| | ||||||||| ||||||| ||||||||| |||||||| || |||  |||||||||||||||| | |||||||||||  || ||||||    
T  9797777 tgatacgaattcgcaagtatacggttctatcgagtagtaaaagattatcaatccacatggagttatatgtaattaccaatcttgtttttcgttttgatta 9797876  T
Q  257 gctgaaaagatcaagttggttggtttcataatttgt-ttgttaaaattcagattaaaaggcatcatgggattgttggtttcatcttaatgtcaaatcata 355  Q
    |||||||||||||||||| |||||       ||||| | ||||||||||| ||||||| || |||||||||  ||||||||||| |||||  ||||||||    
T  9797877 gctgaaaagatcaagttgtttggt-------tttgtctggttaaaattcatattaaaaagcgtcatgggatcattggtttcatcataatgcgaaatcata 9797969  T
Q  356 aacatttcaaatctatttctatatctttaagttaaattctttt 398  Q
    |||||| |||||||||||||  ||| ||| |||||||||||||    
T  9797970 aacattccaaatctatttctccatc-ttatgttaaattctttt 9798011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 379
Target Start/End: Original strand, 33167886 - 33167971
Alignment:
Q  296 ttaaaattcagat--taaaaggcatcatgggattgttggtttcatcttaatgtcaaatcataaacatttcaaatctatttctatat 379  Q
    |||||||||||||  ||||| || ||||||||| |  | ||| ||| |||||||||||| || |||||||| ||||||||||||||    
T  33167886 ttaaaattcagatattaaaaagcgtcatgggatcgaggtttttatcgtaatgtcaaatcctagacatttcatatctatttctatat 33167971  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 299 - 400
Target Start/End: Original strand, 21515842 - 21515943
Alignment:
Q  299 aaattcagattaaaaggcatcatgggattgttggtttcatcttaatgtcaaatcataaacatttcaaatctatttctatatctttaagttaaattctttt 398  Q
    ||||||| ||||||| || ||||||||| ||||||||||||| | |||||| || |||||||| |||  |||||||| |||||||| |||||||||||||    
T  21515842 aaattcaaattaaaaagcgtcatgggatcgttggtttcatctaattgtcaagtcctaaacattccaagcctatttctctatctttaggttaaattctttt 21515941  T
Q  399 ct 400  Q
    ||    
T  21515942 ct 21515943  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 267
Target Start/End: Original strand, 21511328 - 21511397
Alignment:
Q  197 aaagattatcatctacagagagttatatgtaattaacgatcttgtttttaattatgattagctgaaaagat 267  Q
    |||||||||| || ||| ||||||| | ||||||| |||||||||||| ||| ||| ||||||||||||||    
T  21511328 aaagattatcgtccacatagagttaaa-gtaattaccgatcttgttttcaatgatgcttagctgaaaagat 21511397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 273
Target Start/End: Complemental strand, 35407104 - 35407066
Alignment:
Q  235 atcttgtttttaattatgattagctgaaaagatcaagtt 273  Q
    |||||||||||| || |||||||||||||||||||||||    
T  35407104 atcttgtttttagttgtgattagctgaaaagatcaagtt 35407066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 177 - 400
Target Start/End: Complemental strand, 17465623 - 17465400
Alignment:
Q  177 atacgattctatctagtagtaaa--gattatcatctacagagagttatatgtaattaacgatcttgtttttaattatgattagctgaaaagatcaagttg 274  Q
    ||||| ||||||| |||||||||  ||||||| |  ||||||||||| | ||||||| |||||||||||| | | |||||||||||||||||| |||       
T  17465623 atacggttctatcgagtagtaaaaagattatcgttcacagagagttaaa-gtaattaccgatcttgttttcagtgatgattagctgaaaagattaaggat 17465525  T
Q  275 gttggtttcataatttgtttgttaaaattcagattaaaaggcatcatgggattgttggtttcatcttaatgtcaaatcataaacatttcaaatctatttc 374  Q
       | ||||| |  || || ||| || |||||||||||| |  |||||| || ||||||||||||| ||||| || || |||||||| ||| |||||| |    
T  17465524 taagatttca-atgttcttagtttaatttcagattaaaaagtgtcatggcatcgttggtttcatctaaatgttaattcctaaacattccaagtctattcc 17465426  T
Q  375 tatatctttaagttaaattcttttct 400  Q
    | |||||||| |||||||||||||||    
T  17465425 tctatctttaggttaaattcttttct 17465400  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 270
Target Start/End: Original strand, 11376905 - 11376951
Alignment:
Q  224 tgtaattaacgatcttgtttttaattatgattagctgaaaagatcaa 270  Q
    |||||||| |||| || ||| ||||||||||||||||||||||||||    
T  11376905 tgtaattaccgattttctttctaattatgattagctgaaaagatcaa 11376951  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 375
Target Start/End: Complemental strand, 8899044 - 8898987
Alignment:
Q  318 tcatgggattgttggtttcatcttaatgtcaaatcataaacatttcaaatctatttct 375  Q
    ||||||||||| |||||||||| |||||||||||| | |||||| |  ||||||||||    
T  8899044 tcatgggattgatggtttcatcataatgtcaaatctttaacattccctatctatttct 8898987  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 373
Target Start/End: Complemental strand, 12272853 - 12272809
Alignment:
Q  329 ttggtttcatcttaatgtcaaatcataaacatttcaaatctattt 373  Q
    ||||||| ||||||||||||| ||||||||||| ||| |||||||    
T  12272853 ttggttttatcttaatgtcaattcataaacattccaagtctattt 12272809  T

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Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 235 - 400
Target Start/End: Original strand, 42687054 - 42687222
Alignment:
Q  235 atcttgtttttaattatgattagctgaaaagatcaagttggttggtttcataatttgtttgttaaaattcagattaaaag--gcatcatgggattgttgg 332  Q
    ||||||||||||||| |||||||| |||||||| ||||||||||  || ||||||  || ||||||| |||||||||||   || | |||||||  || |    
T  42687054 atcttgtttttaattctgattagcggaaaagattaagttggttgagtttataattgcttggttaaaactcagattaaaaaaagcgtaatgggatcatttg 42687153  T
Q  333 tttcatcttaatgtcaaatcataaacatttcaaatctatttctatatctt-taagttaaattcttttct 400  Q
    ||| ||  ||||| | || |||||||||  ||||||||||||| |||||| || |||||||||||||||    
T  42687154 ttttataataatgccgaaacataaacatgccaaatctatttctctatcttatatgttaaattcttttct 42687222  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 19222659 - 19222611
Alignment:
Q  216 gagttatatgtaattaacgatcttgtttttaattatgattagctgaaaa 264  Q
    |||||||||||||||| |||| |  |||| |||||||||||||||||||    
T  19222659 gagttatatgtaattaccgatttccttttcaattatgattagctgaaaa 19222611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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