View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19755_low_25 (Length: 418)
Name: NF19755_low_25
Description: NF19755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19755_low_25 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 151; Significance: 9e-80; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 237 - 411
Target Start/End: Complemental strand, 7369398 - 7369224
Alignment:
| Q |
237 |
gagcatacgtatacgagaaagcagggtttcttctccttagcaaactcacacttatgcagcgttgtttttatcaaggattagaatggtacataagacgtat |
336 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
7369398 |
gagcatacgtatacgggaaagcagggtttcttctccttagcaaactcacacttatgcagcgttgtttttatcaaggattagaatggtacctaagacgtgt |
7369299 |
T |
|
| Q |
337 |
ctatcaatcatgtcccagcatgggttcctcctcctgcaggttgcctaaagtgctacattgacactatattcttcg |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||| |
|
|
| T |
7369298 |
ctatcaatcatgtcccagcatgggttcctcctcctgcaggttacctaaagtgctacattgacgctatatttttcg |
7369224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 7369644 - 7369554
Alignment:
| Q |
17 |
agtttgtaaggagacattccttaacaatggtaaaaacagcttctagtttccatctttttattgatatcaccacttgtaagttttctcttgt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
7369644 |
agtttgtaaggagacattccttaacaatggtaaaaacagcttctagtttccatctttttattgatatcaccacttataagttttcccttgt |
7369554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 177 - 253
Target Start/End: Complemental strand, 7369486 - 7369410
Alignment:
| Q |
177 |
tgttatgttagttcatcttattattttgctatgaatttatgtagtatatggaagcattatgagcatacgtatacgag |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7369486 |
tgttatgttagttcatcttattattttgctatgaatttatgtagtatatggaagcattatgagcatacgtatacgag |
7369410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University