View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19755_low_26 (Length: 410)
Name: NF19755_low_26
Description: NF19755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19755_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 16 - 247
Target Start/End: Original strand, 12121220 - 12121447
Alignment:
| Q |
16 |
caacttttcgagcactagttgatgttgaacaaggtgatgtaatattaataacatacagtggttatctatcttacaaaggtaactcctcatgaagtaggtg |
115 |
Q |
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| T |
12121220 |
caacttttcgagcacttgttgatgttgaacaaggtgatgtaatattaagaacatacagtggttatctatcttacaaaggtaactcctcatgaagcaggtg |
12121319 |
T |
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| Q |
116 |
attttcaagcagcagagcggtgataaatggttcaatttatgggagaaaatcgaaagggtggctaaggaagtagaat-gactgattctaaagaagtggaat |
214 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
12121320 |
attttcaagcagcagagcggtgataaatggttcaa-----gggagaaaatcgaaaggttggctaaggaagtagaatggactgattctaaagaagtggaat |
12121414 |
T |
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| Q |
215 |
gggtttaagacaaggaacctgaaggacaagggt |
247 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
12121415 |
gggtttaagacaaggaacctgaaggacaagggt |
12121447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 138; Significance: 5e-72; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 247 - 396
Target Start/End: Complemental strand, 21260183 - 21260034
Alignment:
| Q |
247 |
tgtcaaattgatagagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtgaaaaacctatttttac |
346 |
Q |
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| T |
21260183 |
tgtcaaactgatacagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtaaaaaacctatttttac |
21260084 |
T |
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| Q |
347 |
tagactgaaataatggtaaattatttctgattacaaatcaaatccctatg |
396 |
Q |
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| T |
21260083 |
tagactgaaataatggtaaattatttctgattacaaatcaaatccctatg |
21260034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 247 - 396
Target Start/End: Complemental strand, 21264764 - 21264615
Alignment:
| Q |
247 |
tgtcaaattgatagagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtgaaaaacctatttttac |
346 |
Q |
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||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
21264764 |
tgtcaaactgatacagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtaaaaaacctatttttac |
21264665 |
T |
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| Q |
347 |
tagactgaaataatggtaaattatttctgattacaaatcaaatccctatg |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21264664 |
tagactgaaataatggtaaattatttctgattacaaatcaaatccctatg |
21264615 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 255 - 396
Target Start/End: Complemental strand, 6847899 - 6847758
Alignment:
| Q |
255 |
tgatagagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtgaaaaacctatttttactagactga |
354 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
6847899 |
tgatacagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtaaaaaacctatttttactagactga |
6847800 |
T |
|
| Q |
355 |
aataatggtaaattatttctgattacaaatcaaatccctatg |
396 |
Q |
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| T |
6847799 |
aataatggtaaattatttctgattacaaatcaaatccctatg |
6847758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 255 - 396
Target Start/End: Complemental strand, 6843296 - 6843155
Alignment:
| Q |
255 |
tgatagagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtgaaaaacctatttttactagactga |
354 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
6843296 |
tgatacagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtaaaaaatctatttttactagactga |
6843197 |
T |
|
| Q |
355 |
aataatggtaaattatttctgattacaaatcaaatccctatg |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
6843196 |
aataatggtaaattatttctgattacaaatcaaatccctatg |
6843155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 255 - 396
Target Start/End: Complemental strand, 47805328 - 47805187
Alignment:
| Q |
255 |
tgatagagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtgaaaaacctatttttactagactga |
354 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
47805328 |
tgatacagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtaaaaaacctatttttactagactga |
47805229 |
T |
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| Q |
355 |
aataatggtaaattatttctgattacaaatcaaatccctatg |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
47805228 |
aataatggtaaattatttctgattacaaatcaaatccctatg |
47805187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 255 - 396
Target Start/End: Complemental strand, 47800746 - 47800605
Alignment:
| Q |
255 |
tgatagagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtgaaaaacctatttttactagactga |
354 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
47800746 |
tgatacagtaggtctcattttatttctttccaaatctacattacaagagtgtaaaggtattctatatatacaagtaaaaaacctatttttactagattga |
47800647 |
T |
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| Q |
355 |
aataatggtaaattatttctgattacaaatcaaatccctatg |
396 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| |
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| T |
47800646 |
aataatggtaaattatttttgattacaaatcaaatccctatg |
47800605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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