View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19755_low_28 (Length: 401)
Name: NF19755_low_28
Description: NF19755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19755_low_28 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 14 - 401
Target Start/End: Original strand, 5758234 - 5758621
Alignment:
| Q |
14 |
atgaacaaaacagatttaggaacataaagataaag-atgaagacacgaatcttaacgaaatacaaataaggaagaagttgatatctatgcatgctaaggc |
112 |
Q |
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| T |
5758234 |
atgaacaaaacagatttaggaacatagagataaaggatgaagacacgaatcttaacgaaatacaaataaggaagaagttgatatctatgcatgctaaggc |
5758333 |
T |
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| Q |
113 |
aatcaattacttgacactagtagtgaacactaatagtaatcatcttccatcatcatccctacctctactctaccctcattttagacgtggtcctcaccca |
212 |
Q |
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| T |
5758334 |
aatcaattacttgacactagtagtgaacactaatagtaatcatcttccatcatcatccctacctctactctaccctcattttagacgtggtcctcaccca |
5758433 |
T |
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| Q |
213 |
acaacacaacaataggatttgattttcttcacatttttggaaacttgagctttaggtaacattatgaccttgcctcnnnnnnntggtaacaatgtgacca |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
5758434 |
acaacacaacaataggatttgattttcttcacatttttggaaacttgagctttaggtaacattatgacgttgcctcaaaaaaatggtaacaatgtgacca |
5758533 |
T |
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| Q |
313 |
tggatagttatttcttgaatcattttagcatagtcaaagtaatacttcatccgtcctatattatgtgatttatttagagattgtgattt |
401 |
Q |
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| T |
5758534 |
tggattgttattttttgaatc-ttttagcatagtcaaagtaatacttcatccgtcctatattatgtgatttacttagagattgtgattt |
5758621 |
T |
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