View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19755_low_29 (Length: 393)
Name: NF19755_low_29
Description: NF19755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19755_low_29 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 12 - 393
Target Start/End: Complemental strand, 52036167 - 52035790
Alignment:
| Q |
12 |
gaacctgtgtatagtgaatttgtgcaacaccaatagagattcttattaaatggaataaatgcaattgctcgttgttgtgaacttaattagcattcgcaat |
111 |
Q |
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| T |
52036167 |
gaacctgtgtatagtgaatttgtgcaacaccaatagagattcttattaaatggaataaatgcaattggtcgttgttgtgaacttaattagcattcgcaat |
52036068 |
T |
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| Q |
112 |
tattgtttacttgctgtatagaatctcaaacagactaacaacagtagttgccttgcctaatgttgaggcatcccctgttcccacagaaaacggttaaata |
211 |
Q |
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| T |
52036067 |
tattgtttacttgttgtatagaatctcaaacagactaacaacagtagttgccttgccttatgttgaggcatcccctgttcccacagaaaacggtta---a |
52035971 |
T |
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| Q |
212 |
atggttaatgtaatctattgagtggtttatcaattccatcctcttacatttttcattcattcttttcatcaattatccaaacaacttgcaagaacaccta |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
52035970 |
atggttaatgtaatctattgagtggtttatcaattccatcctcttacatttttcattcattcttttcatcaattatccaaacaacttgcaagaacacgta |
52035871 |
T |
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| Q |
312 |
tnnnnnnntgtcaattacttcgaattattttgttgacaaatactaatattgtagaagcttcacagataataagttctctccc |
393 |
Q |
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| T |
52035870 |
t-aaaaaatatcaattacttcgaattattttgtttacaaatactaatattgtagaagcttcacagataataagttctctccc |
52035790 |
T |
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