View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19755_low_33 (Length: 359)
Name: NF19755_low_33
Description: NF19755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19755_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 13 - 345
Target Start/End: Complemental strand, 44007155 - 44006823
Alignment:
| Q |
13 |
tagggagttatggctcactgtcttacttcttttgttttctctattttgtatttgttatattgggagtagcagttagtcacatatgcataggtttttggag |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44007155 |
tagggagttatggctcactgtcttacttcttttgttttctctattttgtatttgttatattgggagtagcagttagtcacatatgcataggtttttggag |
44007056 |
T |
|
| Q |
113 |
ttgctgtatttggaatttggtggtttggagcttgagtctccctcatttggtcttgtttctcattttggtggtacttctggtttcaacagctccaccagca |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
44007055 |
ttgctgtatttggaatttggtggtttggagcttgagtctccctcatttggtcttgtttctcatttaggtggtacttctggtttcaacagctccaccagca |
44006956 |
T |
|
| Q |
213 |
ccaccacaatctgaattaccatatccaccaccatcttgtaataacaattacccttataatccaacaccaccttacggcagcggcggcggtgatgacggca |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
44006955 |
ccaccacaatctgaattaccatatccaccaccatcttgtaataacaattacccttataatccaacaccaccttacggcagcggcggcggtgacgacggca |
44006856 |
T |
|
| Q |
313 |
acaacaataataacaacggtggtggtgtttatg |
345 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
44006855 |
acaacaataataacaacggtggtggtgtttatg |
44006823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 192 - 345
Target Start/End: Complemental strand, 33169143 - 33168987
Alignment:
| Q |
192 |
gtttcaacagctccaccagcaccaccacaatctgaattaccatatccaccaccatcttgtaataacaattacccttataatccaacaccaccttacggca |
291 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||| || |||||||||||||||| |
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| T |
33169143 |
gtttcaacagctccaccagcaccaccacaatctggattaccatatccaccaccttctggtaataacaattacccttataaccctacaccaccttacggca |
33169044 |
T |
|
| Q |
292 |
gcggcggcggtgatgacggcaacaacaat---aataacaacggtggtggtgtttatg |
345 |
Q |
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||||||||| || ||||||||||| ||| || |||||||||||||||||||||| |
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|
| T |
33169043 |
acggcggcggcgacgacggcaacaataataacaacaacaacggtggtggtgtttatg |
33168987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 220 - 339
Target Start/End: Original strand, 19802675 - 19802788
Alignment:
| Q |
220 |
aatctgaattaccatatccaccaccatcttgtaataacaattacccttataatccaacaccaccttacggcagcggcggcggtgatgacggcaacaacaa |
319 |
Q |
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|||||| ||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| || | |||| |
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| T |
19802675 |
aatctggatttccatatccaccaccatccggtaataacaattactcttataatccaacaccaccttacggcagcggcggcggtgacgatg------acaa |
19802768 |
T |
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| Q |
320 |
taataacaacggtggtggtg |
339 |
Q |
| |
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|||||||||||||||||||| |
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| T |
19802769 |
taataacaacggtggtggtg |
19802788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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