View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19755_low_39 (Length: 318)
Name: NF19755_low_39
Description: NF19755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19755_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 21 - 307
Target Start/End: Original strand, 30274461 - 30274753
Alignment:
| Q |
21 |
cgtaactctcctcacacatagcacacgtagaagggcaattcacc-----gtccaacagccttgcatgcgtcggcaaacatccgcgacaagacaaattcgc |
115 |
Q |
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| T |
30274461 |
cgtaactctcctcacacatagcacacgtagaagggcaattcacccccttgtccaacagccttgcacgcgtcggcaaacatccgcgacaagacaaattcgc |
30274560 |
T |
|
| Q |
116 |
cataacaaatttttcactttcagagggaccttcaatctccaaatactagcccaattaccggggcaatgtaaaaatgaattat-cgcaatgactgccatac |
214 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||| ||||||||||||||||| |
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| T |
30274561 |
cataacaaatttttcactttcggagggaccttcaatctccaaatactagcccaattaccagggcgatgtgaaaatgaattatccgcaatgactgccatac |
30274660 |
T |
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| Q |
215 |
acagccgatacacacttctaacagaataacgaccatttttctctaatttccaaattaacagccacttgactaatcagaggagttttaagaata |
307 |
Q |
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| T |
30274661 |
acagccgatacacacttctaacagaataacgaccatttttctctaatttccaaattaacagccacttgactaatcagaggagttttaagaata |
30274753 |
T |
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Target: chr2 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 106 - 272
Target Start/End: Original strand, 14151209 - 14151376
Alignment:
| Q |
106 |
acaaattcgccataacaaatttttcactttcagagggaccttcaatctccaaatactagcccaattaccggggcaatgtaaaaatgaattat-cgcaatg |
204 |
Q |
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|||||||| ||| |||| || |||||||||| ||||||||||||| |||| ||||||| ||||||||| || | ||| ||||||||||||| |||||| |
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| T |
14151209 |
acaaattctccacaacagatctttcactttcggagggaccttcaaattccagatactagaccaattaccaggacgatgcaaaaatgaattatccgcaata |
14151308 |
T |
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| Q |
205 |
actgccatacacagccgatacacacttctaacagaataacgaccatttttctctaatttccaaattaa |
272 |
Q |
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| T |
14151309 |
acttccatatacggtcgatatgcccttctaaccgaataacaaccatttttttctaatttccaaattaa |
14151376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 124 - 273
Target Start/End: Complemental strand, 32795007 - 32794857
Alignment:
| Q |
124 |
atttttcactttcagagggaccttcaatctccaaatactagcccaattaccggggcaatgtaaaaatgaattat-cgcaatgactgccatacacagccga |
222 |
Q |
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|||| |||||||| ||| ||||| ||| | |||||||||| |||||||||||| | |||| ||||||||||| || || ||| |||||||||| ||| |
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| T |
32795007 |
atttctcactttcgaaggaacctttaattttcaaatactagaccaattaccgggacggtgtagaaatgaattattcgtgataacttccatacacagtcga |
32794908 |
T |
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| Q |
223 |
tacacacttctaacagaataacgaccatttttctctaatttccaaattaac |
273 |
Q |
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||||||||||||||||||||| |||||||||||||||| ||| | |||||| |
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| T |
32794907 |
tacacacttctaacagaataatgaccatttttctctaaattctatattaac |
32794857 |
T |
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