View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19755_low_40 (Length: 317)
Name: NF19755_low_40
Description: NF19755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19755_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 13 - 300
Target Start/End: Original strand, 24208302 - 24208589
Alignment:
| Q |
13 |
atactggtgcaacacaaggagatgtgagttccattctgtgtaatgtagagggtcctggcttaaatttcagatctcttgaagctaataacggttttgagtc |
112 |
Q |
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| T |
24208302 |
atactggtgcaacacaaggagatgtgagttccattctgtgtaatgtagagggtcctggcttaaatttcagatctcttgaagctaataacggttttgagtc |
24208401 |
T |
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| Q |
113 |
aataatataaatcacttctcatcaacttctctctatgctagtcacgtcgcactacactctgcagtgttctagagaaagtgtagtagaagttgtaaaatcc |
212 |
Q |
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| T |
24208402 |
aataatataaatcacttctcatcgacttctctctacgctagtcacgtcgcactacactctgcagtgttctagagaaagtgtagtagaagttgtaaaatcc |
24208501 |
T |
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| Q |
213 |
aaagacaacaataacaattatattctaccacttccctcaagttgaaactcaccaatctctccgttttttaagtataaacacacttaag |
300 |
Q |
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| T |
24208502 |
aaagacaacaataacaattatattctaccacttccctcaagttgaaactcaccaatctctccgttttttaagtataaacacacttaag |
24208589 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 29877282 - 29877210
Alignment:
| Q |
19 |
gtgcaacacaaggagatgtgagttccattctgtgtaatgtagagggtcctggcttaaatttcagatctcttga |
91 |
Q |
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||||||||||||||||||||||||||||||| | ||| | ||| ||| || | |||||||||||||| |||| |
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| T |
29877282 |
gtgcaacacaaggagatgtgagttccattctttataacgcagatggtattgacctaaatttcagatctgttga |
29877210 |
T |
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