View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19755_low_42 (Length: 312)
Name: NF19755_low_42
Description: NF19755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19755_low_42 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 3e-79; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 7734527 - 7734312
Alignment:
| Q |
19 |
aagttaacatgttagttaaaaaatggaaccaaacaattgaactctaagtggtaaatgagcttcatcaaagataagtcattcagaagaactcgagtttaat |
118 |
Q |
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| T |
7734527 |
aagttaatatgttagttaaaaaatgtaaccaaacaattgaattc-aagcggtaaatgagtttcatcaaagatgaggcattca-aagaactcgagtttgat |
7734430 |
T |
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| Q |
119 |
tcatgggtagaataatttttggtcagactatccttacatcacagtcgaactccgaattattataggctcttttccctggacctattatgaatcctaactc |
218 |
Q |
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| T |
7734429 |
ttatgggtaaaataatttttggtcagactatccttacatcacagtcgaactccgaattattataggctcttttccctggacctattatgaatcctaactc |
7734330 |
T |
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| Q |
219 |
gaa-gtaaaatcatttgt |
235 |
Q |
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| T |
7734329 |
aaaggtaaaatcatttgt |
7734312 |
T |
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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 252 - 312
Target Start/End: Original strand, 34686658 - 34686718
Alignment:
| Q |
252 |
tcaaatccgtacacggatttttcgctggttaggtcgcatgtctatgtaagcaagcctaacc |
312 |
Q |
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| T |
34686658 |
tcaaatcctgacatggatttttcgcaggttaggtcgtatgtctatgtaagcaagcctaacc |
34686718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 168
Target Start/End: Complemental strand, 33679602 - 33679529
Alignment:
| Q |
97 |
ttcagaagaactcgagtttaattcatgggtagaataatttt--tggtcagactatccttacatcacagtcgaac |
168 |
Q |
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| T |
33679602 |
ttcagaagaactcgagtttgatttctgagtggaataatttttatggtcaaactttacttacatcacagtcgaac |
33679529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 180
Target Start/End: Complemental strand, 9845742 - 9845684
Alignment:
| Q |
122 |
tgggtagaataatttttggtcagactatccttacatcacagtcgaactccgaattatta |
180 |
Q |
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| T |
9845742 |
tgggtggaacaattcttggtcagactatccttacctcacggtcgaactccagattatta |
9845684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 8736829 - 8736872
Alignment:
| Q |
45 |
aaccaaacaattgaactctaagtggtaaatgagcttcatcaaaga |
89 |
Q |
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| T |
8736829 |
aaccaaacaattgaact-taagtggcaaatgagcttcaccaaaga |
8736872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 33704268 - 33704225
Alignment:
| Q |
45 |
aaccaaacaattgaactctaagtggtaaatgagcttcatcaaaga |
89 |
Q |
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| T |
33704268 |
aaccaagcaattgagctc-aagtggtaaatgagcttcatcaaaga |
33704225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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