View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19755_low_43 (Length: 310)
Name: NF19755_low_43
Description: NF19755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19755_low_43 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 14 - 294
Target Start/End: Complemental strand, 39395931 - 39395653
Alignment:
| Q |
14 |
aggatctgcttcgcaaggagattcaatatcgtattcttgagctaaactcgaataaagggaaatagnnnnnnngtagtacttaaacagcttaatgtagaga |
113 |
Q |
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| T |
39395931 |
aggatctgcttcgcaaggagattcaatatcgtattcttgagctaaactcgaataaagggaaatagtttttttgtagtacttaaacagcttaatgtagaga |
39395832 |
T |
|
| Q |
114 |
aatgtggtaatggaaatctgccaacatatacagtacttttgttgggtactattcacgtgtaaatgtgtaaatgacttcgaacactagttttttcccaact |
213 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39395831 |
aatgtggtaatggaaatctgccaacatatacactacttttgttgggtactattcacgtgtaaatgtgtaaatgacttcgaacactagttttttcccaact |
39395732 |
T |
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| Q |
214 |
ctttgtaaaatgtctaattgataagaatgaaaacccgtgaaaaattaacaatatctatatttcttggctccctgtgctttc |
294 |
Q |
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| T |
39395731 |
c--tgtaaaatgtctaattgaaaagaatgaaaaccggtgaaaaattaacaatatctatatttcttggctccctgtgctttc |
39395653 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 16115634 - 16115680
Alignment:
| Q |
14 |
aggatctgcttcgcaaggagattcaatatcgtattcttgagctaaac |
60 |
Q |
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|||||||||||||| |||| ||||||| |||||||| |||||||||| |
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| T |
16115634 |
aggatctgcttcgcgaggaaattcaatgtcgtattcatgagctaaac |
16115680 |
T |
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