View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19755_low_46 (Length: 292)
Name: NF19755_low_46
Description: NF19755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19755_low_46 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 21930241 - 21929961
Alignment:
| Q |
1 |
ctgaacaacttatgatcttagaggaactgtatagaagtggaattagaactcctagtgctgttcaaattcagcaaataactactcacctttctttctatgg |
100 |
Q |
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| T |
21930241 |
ctgaacaacttatgatcttagaggaactgtatagaagtggaattagaactcctagtgctgttcaaattcagcaaataactactcacctttctttctatgg |
21930142 |
T |
|
| Q |
101 |
taggatagaaggaaaaaatgttttctattggtttcagaatcataaggctagggatagacagaagttaagaaggaaacttaacaaacaactgcagctannn |
200 |
Q |
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| T |
21930141 |
taggatagaaggaaaaaatgttttctattggtttcagaatcataaggctagggatagacagaagttaagaaggaaacttaacaaacaactgcagctacag |
21930042 |
T |
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| Q |
201 |
nnnnnnnnnnnnnnnnna---caacaacaactacatgttcatcattgtcaactcaatcataataatatgattagtaaccat |
278 |
Q |
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| T |
21930041 |
cagcagcagcagcagcaacaacaacaacaactacatgttcatcattgtcaactcaatcataataatatgattagtaaccat |
21929961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 142
Target Start/End: Complemental strand, 40004958 - 40004924
Alignment:
| Q |
108 |
gaaggaaaaaatgttttctattggtttcagaatca |
142 |
Q |
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| T |
40004958 |
gaaggcaaaaatgttttctattggtttcagaatca |
40004924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 142
Target Start/End: Complemental strand, 45304877 - 45304843
Alignment:
| Q |
108 |
gaaggaaaaaatgttttctattggtttcagaatca |
142 |
Q |
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| T |
45304877 |
gaaggcaaaaatgttttctattggtttcagaatca |
45304843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 142
Target Start/End: Original strand, 40220588 - 40220622
Alignment:
| Q |
108 |
gaaggaaaaaatgttttctattggtttcagaatca |
142 |
Q |
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| T |
40220588 |
gaaggcaaaaatgttttctattggtttcagaatca |
40220622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 96 - 164
Target Start/End: Complemental strand, 8554898 - 8554830
Alignment:
| Q |
96 |
tatggtaggatagaaggaaaaaatgttttctattggtttcagaatcataaggctagggatagacagaag |
164 |
Q |
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||||||| ||| ||||| |||||||| || ||||||||||| ||||| || ||||| || ||||||||| |
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| T |
8554898 |
tatggtaagattgaaggcaaaaatgtcttttattggtttcaaaatcacaaagctagagaaagacagaag |
8554830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 148
Target Start/End: Original strand, 32906772 - 32906812
Alignment:
| Q |
108 |
gaaggaaaaaatgttttctattggtttcagaatcataaggc |
148 |
Q |
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|||||||||||||| ||||||||||| |||||||| ||||| |
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| T |
32906772 |
gaaggaaaaaatgtgttctattggttccagaatcacaaggc |
32906812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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