View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19755_low_5 (Length: 620)
Name: NF19755_low_5
Description: NF19755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19755_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 43696678 - 43696246
Alignment:
| Q |
1 |
agatccatgtggataagtatagttagttagcattttcctaagtataattagtgtaacattgaaattaatgaactaattaagccggagtatattattatta |
100 |
Q |
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| T |
43696678 |
agatccatgtggataagtatagttagttagcattttcctaagtataattagtgtaacattgaaattaatgaactaattaagctggagtatattattatta |
43696579 |
T |
|
| Q |
101 |
agcgaggcaggatccgttgacaaaatagaagcaggtgatgcaacacaagccaattgaaaaaacgagcatgttcaccgtcgtcatcaacaggtgactaatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43696578 |
agcgaggcaggatccgttgacaaaatagaagcaggtgatgcaacacaagccaattgaaaaaacgagcatgttcaccgtcgtcatcaacaggtgactaatc |
43696479 |
T |
|
| Q |
201 |
atactccatattacttataaattgtgtcattagaaaacttattgattgaaaagcattgcatgcttaacattctaaattatgtcattaagttaattttata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43696478 |
atactccatattacttataaattgtgtcattagaaaacttattgattgaaaagcattgcatgcttaacattctaaattatgtcattaagttaattttata |
43696379 |
T |
|
| Q |
301 |
tccataagtggaaaggtgggaaataatagaaaaagtaaatctgtcccattgtgacctgaatgaagctgaatcaaatgtataatatatagtgcaaagatgg |
400 |
Q |
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| T |
43696378 |
tccataagtggaaaggtgggaaataatagaaaaagtaaatctgtcccattgtgacctgaatgaagctgaatcaaatgtata----atagtgcaaagatgg |
43696283 |
T |
|
| Q |
401 |
gacatgctttctagcattattggactctatgagctca |
437 |
Q |
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| T |
43696282 |
gacatgctttctagcattattggactctatgagctca |
43696246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 435 - 605
Target Start/End: Complemental strand, 43696219 - 43696049
Alignment:
| Q |
435 |
tcattgtattaaataaaaggttcnnnnnnnctatctacaggttggtccatgtgataatggttcatttaaaatatgtctcagattgaggaatatgacaagg |
534 |
Q |
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||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43696219 |
tcattgtattaaataaaaggttctttttttctatacacaggttggtccatgtgataatggttcatttaaaatatgtctcagattgaggaatatgacaagg |
43696120 |
T |
|
| Q |
535 |
acaagggcaaagacatttgttggaagagtgtcagtcacatgaacttttcttatgcggcgataaaaataaat |
605 |
Q |
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| T |
43696119 |
acaagggcaaagacatttgttggaagagtgtcagtcacatgagcttttcttatgcggcgataaaaataaat |
43696049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 256 - 288
Target Start/End: Original strand, 32214076 - 32214108
Alignment:
| Q |
256 |
ttgcatgcttaacattctaaattatgtcattaa |
288 |
Q |
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|||||||||||||||| |||||||||||||||| |
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| T |
32214076 |
ttgcatgcttaacattttaaattatgtcattaa |
32214108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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