View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19755_low_50 (Length: 262)
Name: NF19755_low_50
Description: NF19755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19755_low_50 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 36135837 - 36136080
Alignment:
| Q |
1 |
cggatgtcgaagaatatatcgccaagacttactgctcacagaaagctttcttattgcttgtaagttctattatggttggtgcaaccaggaaaatcacgag |
100 |
Q |
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| T |
36135837 |
cggatgtccaagaaaagatcgccaagacttactgctcacagaaagctttcttattgcttgtaagttctgttatggttggtgcaaccaggaaaatcacgag |
36135936 |
T |
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| Q |
101 |
aagcattttgttttcaaacacatcaatattattgattctctgcgggcaagcaacaacctggggcgtagcagcgtagcaacagtaaaggtatttaacttta |
200 |
Q |
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| T |
36135937 |
aagcattttgtttccaaacacatcaatattattgattctctgcgggcaagcaacaacctggggcgtagccgcgtagcatcagtaaaggtatataacttta |
36136036 |
T |
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| Q |
201 |
aaacctacatcggaacaattctttttatttaagatgtttctgtt |
244 |
Q |
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| T |
36136037 |
aaaccttcatcggaacaattctttttatttaagatgtttctgtt |
36136080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 5 - 225
Target Start/End: Original strand, 41337395 - 41337607
Alignment:
| Q |
5 |
tgtcgaagaatatatcgccaagacttactgctcacagaaagctttcttattgcttgtaagttctattatggttggtgcaaccaggaaaatcacgagaagc |
104 |
Q |
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| T |
41337395 |
tgtccaagaaaagatcgccaagacttgctgctcacagaaagctttcttattgcttcaaagttctgttatggttggcgcaaccagaaaaatcgagagaagc |
41337494 |
T |
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| Q |
105 |
attttgttttcaaacacatcaatattattgattctctgcgggcaagcaacaacctggggcgtagcagcgtagcaacagtaaaggtatttaactttaaaac |
204 |
Q |
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| T |
41337495 |
attttgtttccaaacacatcaatattattgatcctctgcaggaaaacaacaacctggg--------gcatagcatcagtagaggtatttcactttaaaac |
41337586 |
T |
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| Q |
205 |
ctacatcggaacaattctttt |
225 |
Q |
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| T |
41337587 |
cttcattgaaacaattctttt |
41337607 |
T |
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