View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19755_low_53 (Length: 252)
Name: NF19755_low_53
Description: NF19755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19755_low_53 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 1558273 - 1558032
Alignment:
| Q |
1 |
ccattagcactattttttataacccaataatttgaaacttgataaaaccacatgacagctgtaaaaactcatgttactacatttgctttatctcatcaac |
100 |
Q |
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| T |
1558273 |
ccattagcactattttttataacccaataatttgaaacttgataaaaccacatgacagctgtaaaaactcatgttactacatttgctttatctcatcaac |
1558174 |
T |
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| Q |
101 |
aacaaaacaaaaacagnnnnnnnnatttagcatagaaaaagaatatggctataagccgacaaatgtaaactgttatcggaacatcgcaaataacaatgga |
200 |
Q |
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| T |
1558173 |
aacaaaacaaaaacagttttttttatttagcatagaaaaagaatatggctataagccgacaaatgtaaactgttatcggaacatcgcaaataacaatgga |
1558074 |
T |
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| Q |
201 |
taaataatggtttgctggcaagaacacacactcagtattatc |
242 |
Q |
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| T |
1558073 |
taaataatggtttgctggcaagaacacacactcagtattatc |
1558032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 127 - 230
Target Start/End: Complemental strand, 23891488 - 23891386
Alignment:
| Q |
127 |
ttagcatagaaaaagaatatggctataagccgacaaatgtaaactgttatcggaacatcgcaaataacaatggataaataatggtttgctggcaagaaca |
226 |
Q |
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||||| |||||||| || ||||||||||||| |||||||| ||||||||||| |||||||||| |||||||||||||||||| |||| | |||||||| | |
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| T |
23891488 |
ttagcgtagaaaaaaaa-atggctataagcctacaaatgtgaactgttatcgaaacatcgcaactaacaatggataaataattgttttcaggcaagaaga |
23891390 |
T |
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| Q |
227 |
caca |
230 |
Q |
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|||| |
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| T |
23891389 |
caca |
23891386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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