View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19755_low_54 (Length: 250)

Name: NF19755_low_54
Description: NF19755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19755_low_54
NF19755_low_54
[»] chr4 (14 HSPs)
chr4 (13-250)||(28687394-28687634)
chr4 (105-250)||(54164549-54164697)
chr4 (81-250)||(13552753-13552917)
chr4 (78-159)||(33752710-33752791)
chr4 (104-169)||(32186634-32186699)
chr4 (82-161)||(53343707-53343786)
chr4 (91-177)||(17431119-17431205)
chr4 (103-177)||(28687620-28687694)
chr4 (105-177)||(16854786-16854858)
chr4 (105-149)||(17430738-17430782)
chr4 (77-148)||(22224424-22224495)
chr4 (79-177)||(34665137-34665235)
chr4 (78-148)||(55243777-55243847)
chr4 (79-148)||(44380515-44380584)
[»] chr5 (17 HSPs)
chr5 (81-233)||(25905959-25906114)
chr5 (77-250)||(13657546-13657722)
chr5 (79-169)||(24490693-24490782)
chr5 (82-233)||(22297862-22298016)
chr5 (77-168)||(25906125-25906216)
chr5 (77-202)||(6843079-6843207)
chr5 (79-250)||(17047938-17048111)
chr5 (82-169)||(22297764-22297851)
chr5 (105-176)||(29673698-29673769)
chr5 (79-170)||(38298693-38298784)
chr5 (80-174)||(2344626-2344720)
chr5 (79-176)||(29673290-29673386)
chr5 (79-142)||(12272502-12272564)
chr5 (79-177)||(13657708-13657806)
chr5 (99-177)||(15773726-15773804)
chr5 (79-177)||(38900222-38900319)
chr5 (77-177)||(5161062-5161160)
[»] chr8 (15 HSPs)
chr8 (78-177)||(33892195-33892294)
chr8 (77-250)||(33892033-33892209)
chr8 (80-219)||(9861568-9861710)
chr8 (113-170)||(36874343-36874400)
chr8 (78-177)||(37037263-37037360)
chr8 (112-250)||(10069883-10070032)
chr8 (75-174)||(29242427-29242525)
chr8 (114-177)||(29242831-29242894)
chr8 (80-170)||(31212313-31212403)
chr8 (105-197)||(10069995-10070090)
chr8 (77-174)||(15229613-15229710)
chr8 (105-177)||(6906432-6906504)
chr8 (105-177)||(8791735-8791807)
chr8 (81-177)||(27503649-27503745)
chr8 (80-148)||(36102133-36102201)
[»] chr3 (15 HSPs)
chr3 (79-177)||(8896026-8896124)
chr3 (77-233)||(4304140-4304299)
chr3 (81-169)||(30430271-30430359)
chr3 (82-169)||(2928096-2928183)
chr3 (78-177)||(6931099-6931198)
chr3 (112-177)||(28725670-28725734)
chr3 (79-170)||(4304310-4304404)
chr3 (105-145)||(25799513-25799553)
chr3 (69-148)||(46835629-46835708)
chr3 (79-177)||(32618945-32619043)
chr3 (115-169)||(45404832-45404886)
chr3 (114-250)||(10821864-10822003)
chr3 (78-159)||(30172069-30172150)
chr3 (79-148)||(43862527-43862596)
chr3 (105-145)||(27614039-27614079)
[»] chr2 (20 HSPs)
chr2 (81-250)||(980920-981090)
chr2 (105-177)||(37897600-37897672)
chr2 (105-250)||(12874705-12874853)
chr2 (78-177)||(16192571-16192671)
chr2 (121-212)||(25330675-25330769)
chr2 (77-149)||(39786313-39786385)
chr2 (78-169)||(18509495-18509586)
chr2 (106-197)||(12874816-12874910)
chr2 (82-177)||(16127920-16128015)
chr2 (104-170)||(27847998-27848064)
chr2 (105-177)||(981076-981147)
chr2 (84-250)||(16128001-16128169)
chr2 (82-177)||(40152701-40152795)
chr2 (185-250)||(4921271-4921336)
chr2 (80-169)||(20972389-20972478)
chr2 (105-169)||(27847882-27847946)
chr2 (78-203)||(7328331-7328459)
chr2 (105-233)||(35926824-35926955)
chr2 (105-169)||(35926749-35926813)
chr2 (137-212)||(39159216-39159294)
[»] chr7 (19 HSPs)
chr7 (78-233)||(31172275-31172433)
chr7 (80-250)||(31198381-31198553)
chr7 (78-246)||(19105254-19105424)
chr7 (81-250)||(9686376-9686540)
chr7 (105-177)||(7760756-7760828)
chr7 (81-177)||(20164620-20164716)
chr7 (79-169)||(7760607-7760697)
chr7 (80-178)||(29635235-29635332)
chr7 (105-166)||(20165011-20165072)
chr7 (105-174)||(23797206-23797275)
chr7 (80-233)||(8129879-8130034)
chr7 (77-177)||(15329854-15329955)
chr7 (105-177)||(31198323-31198395)
chr7 (105-169)||(37081261-37081325)
chr7 (77-164)||(3555362-3555448)
chr7 (75-169)||(19105421-19105515)
chr7 (77-233)||(21657294-21657453)
chr7 (77-171)||(35054442-35054536)
chr7 (80-148)||(43725998-43726066)
[»] chr6 (12 HSPs)
chr6 (78-169)||(31298722-31298813)
chr6 (82-250)||(13340445-13340616)
chr6 (77-197)||(13340579-13340702)
chr6 (80-177)||(30519681-30519777)
chr6 (78-177)||(31298883-31298982)
chr6 (105-169)||(24704332-24704396)
chr6 (77-170)||(12290135-12290227)
chr6 (105-177)||(12290005-12290077)
chr6 (77-165)||(33599847-33599935)
chr6 (105-177)||(34637583-34637655)
chr6 (91-177)||(10284361-10284447)
chr6 (112-177)||(19045049-19045114)
[»] chr1 (16 HSPs)
chr1 (75-177)||(22679485-22679587)
chr1 (75-177)||(30749099-30749201)
chr1 (75-177)||(30770550-30770652)
chr1 (133-233)||(51941968-51942071)
chr1 (78-169)||(16706502-16706596)
chr1 (78-177)||(14760033-14760131)
chr1 (105-203)||(13765581-13765682)
chr1 (75-177)||(30746920-30747021)
chr1 (75-177)||(30768371-30768472)
chr1 (79-169)||(35294332-35294422)
chr1 (80-177)||(30748951-30749048)
chr1 (80-177)||(30770402-30770499)
chr1 (80-162)||(15393145-15393227)
chr1 (107-164)||(20171415-20171472)
chr1 (80-141)||(51680854-51680915)
chr1 (113-177)||(8819351-8819414)
[»] scaffold0025 (2 HSPs)
scaffold0025 (185-242)||(63933-63990)
scaffold0025 (105-197)||(63961-64056)
[»] scaffold0328 (1 HSPs)
scaffold0328 (103-165)||(11623-11685)
[»] scaffold0007 (1 HSPs)
scaffold0007 (99-169)||(175528-175598)


Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 28687394 - 28687634
Alignment:
Q  13 aaaatctataactattaatatttgcataagtgcgtgaacaaaaattaatatttgctgaaaagaattagggttaaatatgtaaatgatccttttaaataca 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| |    
T  28687394 aaaatctataactattaatatttgcataagtgcgtgaacaaaaattaatatttgcttaaaagaattagggttaaatatgtaaatgagccctttaaatata 28687493  T
Q  113 ccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcatatgtgaa---agtccctgctctacattgaacatta 209  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||   ||||| ||||||||||| | |||||    
T  28687494 ccaacatttaattttaatctctctaaaatattccttatgcttttggtccatctaaaaattttcatatgtgaaattagtccgtgctctacattaagcatta 28687593  T
Q  210 caccagagcagggactaatttcatcgctgaaaatttttaga 250  Q
    ||| ||||||||||||||||| || | |||||| |||||||    
T  28687594 cactagagcagggactaattttattgatgaaaaattttaga 28687634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 105 - 250
Target Start/End: Complemental strand, 54164697 - 54164549
Alignment:
Q  105 taaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcatatgtgaa---agtccctgctctacatt 201  Q
    |||||| |||||||||| |||||||||||| |||||||||  ||| ||||| ||||||||||||| ||||||| | ||||   |||| ||||||||||||    
T  54164697 taaatataccaacatttgattttagtctctataaaatattttttaggttttcggtccctctaaaatttttcatttatgaaattagtcactgctctacatt 54164598  T
Q  202 gaacattacaccagagcagggactaatttcatcgctgaaaatttttaga 250  Q
    ||  ||||||| |||| || ||||||||||||   |||||| |||||||    
T  54164597 gagtattacactagagtagagactaatttcataaatgaaaaattttaga 54164549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 81 - 250
Target Start/End: Complemental strand, 13552917 - 13552753
Alignment:
Q  81 ggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcatatg 180  Q
    ||||||||| ||||||  ||||  |||||| | ||| |||| ||||||||| |  |||||||||  ||| | ||||||||| ||||||| ||||||| |     
T  13552917 ggttaaataagtaaatagtcctcctaaatatatcaatatttgattttagtccccataaaatattatttaggcttttggtccttctaaaatttttcattt- 13552819  T
Q  181 tgaaagtccctgctctacattgaacattacaccagagcagggactaatttcatcgctgaaaatttttaga 250  Q
        |||||||||||||||||||  ||||||| ||||||| ||||||||||||   |||||| |||||||    
T  13552818 ----agtccctgctctacattgagtattacactagagcagagactaatttcataaatgaaaaattttaga 13552753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 78 - 159
Target Start/End: Complemental strand, 33752791 - 33752710
Alignment:
Q  78 tagggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggt 159  Q
    |||||||||||| ||||| | |||||||||||| | |||||||| ||||||||||| ||||||||||| ||| | |||||||    
T  33752791 tagggttaaataagtaaacggtccttttaaatatatcaacatttgattttagtctccctaaaatattctttaggcttttggt 33752710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 169
Target Start/End: Complemental strand, 32186699 - 32186634
Alignment:
Q  104 ttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaa 169  Q
    ||||||| |||||||||||||||||||  ||||||||||||| ||| | |||||||| ||||||||    
T  32186699 ttaaatataccaacatttaattttagttcctctaaaatattctttaggcttttggtctctctaaaa 32186634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 161
Target Start/End: Original strand, 53343707 - 53343786
Alignment:
Q  82 gttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtcc 161  Q
    |||||||| ||||||| |||| ||||||| |||||| ||| |||||||||||  ||||||||| |||| ||||| |||||    
T  53343707 gttaaataagtaaatggtcctcttaaatataccaacgtttgattttagtctcgttaaaatatttcttaggttttgggtcc 53343786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 177
Target Start/End: Complemental strand, 17431205 - 17431119
Alignment:
Q  91 gtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcat 177  Q
    ||||||| ||| | |||||| | |||||||| ||||||||| | ||||||||||  ||| | |||||||||||| ||||||||||||    
T  17431205 gtaaatggtccatctaaatatatcaacatttgattttagtccccctaaaatattttttaggcttttggtccctccaaaaattttcat 17431119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 103 - 177
Target Start/End: Complemental strand, 28687694 - 28687620
Alignment:
Q  103 tttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcat 177  Q
    |||||||| | |||||||| ||||||||  ||||||||||||  ||| | ||||||||||||||||| |||||||    
T  28687694 tttaaatatatcaacatttgattttagttactctaaaatattttttagggttttggtccctctaaaatttttcat 28687620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 177
Target Start/End: Complemental strand, 16854858 - 16854786
Alignment:
Q  105 taaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcat 177  Q
    |||||| | ||||||| ||||||||||  ||||||||||||||||  |||||| | ||| |||||||||||||    
T  16854858 taaatagatcaacattaaattttagtccgtctaaaatattccttagttttttgattcctttaaaaattttcat 16854786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 17430738 - 17430782
Alignment:
Q  105 taaatacaccaacatttaattttagtctctctaaaatattcctta 149  Q
    |||||| |||||||||| ||||||||| |||||||||||||||||    
T  17430738 taaatataccaacatttgattttagtccctctaaaatattcctta 17430782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 148
Target Start/End: Complemental strand, 22224495 - 22224424
Alignment:
Q  77 ttagggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattcctt 148  Q
    ||||||||||||||||  ||| ||| | |||||| |||||| |||  |||||||| ||||||||||||||||    
T  22224495 ttagggttaaatatgtttatggtccctataaatataccaacttttcgttttagtccctctaaaatattcctt 22224424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 177
Target Start/End: Complemental strand, 34665235 - 34665137
Alignment:
Q  79 agggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcat 177  Q
    ||||||||||| ||||||| |  | ||||||| |||||||||| ||||||||| | ||||||||||  ||| | ||||| ||| |||| ||| ||||||    
T  34665235 agggttaaataagtaaatggtaatattaaatataccaacatttgattttagtcaccctaaaatattttttaggcttttgttccttctacaaaatttcat 34665137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 55243777 - 55243847
Alignment:
Q  78 tagggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattcctt 148  Q
    |||||||||||||||   || ||||| |||||| |||||| |||  |||||||||||||||||| ||||||    
T  55243777 tagggttaaatatgtttttgctccttataaatataccaacgttttgttttagtctctctaaaattttcctt 55243847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 148
Target Start/End: Original strand, 44380515 - 44380584
Alignment:
Q  79 agggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattcctt 148  Q
    ||||||||||||||   || ||||| |||||| |||||| |||  |||||||||||||||||| ||||||    
T  44380515 agggttaaatatgtttctggtccttataaatataccaactttttgttttagtctctctaaaattttcctt 44380584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 81 - 233
Target Start/End: Original strand, 25905959 - 25906114
Alignment:
Q  81 ggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcatatg 180  Q
    ||||||||| |||||||||||  ||| ||| |||||||||| ||||||||| | ||||| |||| | || | ||||||||||||||||| ||||||| |     
T  25905959 ggttaaataagtaaatgatccccttatatataccaacatttgattttagtccccctaaagtatttcataggcttttggtccctctaaaatttttcatcta 25906058  T
Q  181 tgaa---agtccctgctctacattgaacattacaccagagcagggactaatttcat 233  Q
    | ||   |||||||||||||||||||  ||||||| ||||||| ||||||||||||    
T  25906059 taaaattagtccctgctctacattgagtattacactagagcagagactaatttcat 25906114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 77 - 250
Target Start/End: Original strand, 13657546 - 13657722
Alignment:
Q  77 ttagggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttca 176  Q
    ||||| |||||||  |||||| ||| |||||||| || ||||||| ||||||||  ||||||||||||| |||   |||||||| ||||||||| |||||    
T  13657546 ttaggattaaataaataaatggtccctttaaatatacaaacatttgattttagttcctctaaaatattctttagacttttggtctctctaaaaaatttca 13657645  T
Q  177 tatgtgaa---agtccctgctctacattgaacattacaccagagcagggactaatttcatcgctgaaaatttttaga 250  Q
    | | ||||   |||   |||||||||||||  ||||||| |||||| |||||||||||||   ||||||||||||||    
T  13657646 tctatgaaattagtttttgctctacattgagtattacactagagcatggactaatttcatacatgaaaatttttaga 13657722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 79 - 169
Target Start/End: Original strand, 24490693 - 24490782
Alignment:
Q  79 agggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaa 169  Q
    ||||||||||| ||||||| ||||| ||| || |||||||||| |||||||||||||||||||||  |||| |||||||||||||| ||||    
T  24490693 agggttaaataagtaaatggtccttctaa-tataccaacatttgattttagtctctctaaaatatctcttaagtttttggtccctccaaaa 24490782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 82 - 233
Target Start/End: Complemental strand, 22298016 - 22297862
Alignment:
Q  82 gttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcatatgt 181  Q
    |||||||| ||||||| |||   |||||| || ||||||| ||||||||| |  |||||||||  ||| ||||||||||||||||||| ||||||| | |    
T  22298016 gttaaataagtaaatggtccccctaaatatactaacatttgattttagtccccttaaaatattttttaagtttttggtccctctaaaatttttcatttat 22297917  T
Q  182 gaa---agtccctgctctacattgaacattacaccagagcagggactaatttcat 233  Q
    |||   |||| | ||||||||||||  ||||||  || |||||||||||||||||    
T  22297916 gaaattagtctcagctctacattgagtattacaatagcgcagggactaatttcat 22297862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 77 - 168
Target Start/End: Complemental strand, 25906216 - 25906125
Alignment:
Q  77 ttagggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaa 168  Q
    ||||||||||||| |||||| |||||  |||||| | |||||||| ||||||||| | || |||||||| ||| | ||||||||||||||||    
T  25906216 ttagggttaaataagtaaataatcctcctaaatatatcaacatttgattttagtcccccttaaatattctttaggcttttggtccctctaaa 25906125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 202
Target Start/End: Original strand, 6843079 - 6843207
Alignment:
Q  77 ttagggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttca 176  Q
    |||||||||||||  |||||  ||  |||||||| || ||||||| |||||||||   ||| |||||||||||  |||||||||||||||||| ||||||    
T  6843079 ttagggttaaataaataaatagtctctttaaatatacaaacatttgattttagtcctcctagaatattccttagatttttggtccctctaaaatttttca 6843178  T
Q  177 tatgtgaa---agtccctgctctacattg 202  Q
    | | ||||   | ||||||||||||||||    
T  6843179 tctatgaaattaatccctgctctacattg 6843207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 250
Target Start/End: Complemental strand, 17048111 - 17047938
Alignment:
Q  79 agggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcata 178  Q
    ||||||||||| || ||||||||  ||||||| |||||||||| | ||||||| | |||||| |||  ||| | ||||||| |||||||||| ||||||     
T  17048111 agggttaaataagtgaatgatccccttaaatataccaacatttga-tttagtccccctaaaagattttttaggcttttggttcctctaaaaaatttcatc 17048013  T
Q  179 tgtgaa---agtccctgctctacattgaacattacaccagagcagggactaatttcatcgctgaaaatttttaga 250  Q
    | | ||   |||| ||||||||||||||  ||||||  ||||||| |||||| |||||   |||||| |||||||    
T  17048012 tattaaattagtctctgctctacattgagtattacagtagagcagagactaacttcataaatgaaaaattttaga 17047938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 169
Target Start/End: Original strand, 22297764 - 22297851
Alignment:
Q  82 gttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaa 169  Q
    |||||||| ||||||  ||| | |||||| | |||||||| ||||||||| ||||||||||||  ||| ||||||||||||| |||||    
T  22297764 gttaaataagtaaatagtccctctaaatatatcaacatttgattttagtccctctaaaatattttttaggtttttggtccctttaaaa 22297851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 176
Target Start/End: Complemental strand, 29673769 - 29673698
Alignment:
Q  105 taaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttca 176  Q
    |||||| || ||||||| ||||||||  |||||||||||| |||| | |||||||||||| |||||||||||    
T  29673769 taaatatacaaacatttgattttagttcctctaaaatatttcttaaggttttggtccctccaaaaattttca 29673698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 170
Target Start/End: Original strand, 38298693 - 38298784
Alignment:
Q  79 agggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaa 170  Q
    ||||||||||| ||||||||||  | |||||| | ||| |||| |||| |||| ||||||||||||| ||| |||||| ||| |||||||||    
T  38298693 agggttaaataagtaaatgatcagtctaaatatatcaatatttgatttaagtccctctaaaatattctttaggttttttgtctctctaaaaa 38298784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 80 - 174
Target Start/End: Complemental strand, 2344720 - 2344626
Alignment:
Q  80 gggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaatttt 174  Q
    |||||||||| ||||||  ||||  |||||| |||||||||| ||||||||  |||||| ||||||||||   ||||||||||| ||||| ||||    
T  2344720 gggttaaataagtaaatagtcctcctaaatagaccaacattttattttagttcctctaacatattccttagtcttttggtccctttaaaattttt 2344626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 176
Target Start/End: Original strand, 29673290 - 29673386
Alignment:
Q  79 agggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttca 176  Q
    ||||||||||| ||||||| |||  ||||||| |||||||||| |||||||||   ||||||||||  ||| | ||||| |||||||||||| |||||    
T  29673290 agggttaaataagtaaatggtccccttaaatataccaacatttgattttagtcctcctaaaatatt-tttaggattttgttccctctaaaaaatttca 29673386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 142
Target Start/End: Original strand, 12272502 - 12272564
Alignment:
Q  79 agggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaata 142  Q
    ||||||||||||| ||| |||| |  |||||| |||||||||| ||||||||||||||||||||    
T  12272502 agggttaaatatgcaaa-gatcatcctaaatataccaacatttgattttagtctctctaaaata 12272564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 177
Target Start/End: Complemental strand, 13657806 - 13657708
Alignment:
Q  79 agggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcat 177  Q
    ||||||||||| ||||||  |||| | ||||| || ||||||| |||||||| |  ||||||||||  ||  | ||||| |||||||||||||||||||    
T  13657806 agggttaaataagtaaatagtcctctgaaatatactaacatttgattttagttttcctaaaatattattttggcttttgttccctctaaaaattttcat 13657708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 177
Target Start/End: Complemental strand, 15773804 - 15773726
Alignment:
Q  99 tccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcat 177  Q
    ||||| |||||| || |||| || ||||||||||  ||||||||| ||||| | |||||||||||| ||||| ||||||    
T  15773804 tccttctaaatatactaacaattgattttagtcttcctaaaatatcccttaggcttttggtccctccaaaaaatttcat 15773726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 177
Target Start/End: Original strand, 38900222 - 38900319
Alignment:
Q  79 agggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcat 177  Q
    ||||||||||| ||||||  ||| | |||||| ||||| |||| ||||||||||| ||||||||||  ||||| ||||||| || | ||||| ||||||    
T  38900222 agggttaaataagtaaattttccctctaaatataccaatattttattttagtctc-ctaaaatattttttatgcttttggttccaccaaaaaatttcat 38900319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 177
Target Start/End: Complemental strand, 5161160 - 5161062
Alignment:
Q  77 ttagggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttca 176  Q
    ||||||||||||| |||||||||  | ||||||| |  ||||||| |||||| || | ||||||||||  ||| ||||||| | ||||||||||||||||    
T  5161160 ttagggttaaataagtaaatgattttcttaaatatattaacatttgattttactc-ccctaaaatattatttaggtttttgat-cctctaaaaattttca 5161063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 78 - 177
Target Start/End: Complemental strand, 33892294 - 33892195
Alignment:
Q  78 tagggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcat 177  Q
    |||||||||||| |||||  ||| | ||||||| |||||||||| ||||||||| || |||||||||| ||||||||||||||||||||||| |||||||    
T  33892294 tagggttaaataagtaaacaatcttcttaaatataccaacatttgattttagtccctttaaaatattctttatgtttttggtccctctaaaatttttcat 33892195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 77 - 250
Target Start/End: Original strand, 33892033 - 33892209
Alignment:
Q  77 ttagggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttca 176  Q
    ||||||||||||| ||||||  | || ||||||| |||||||||| ||||||||| |   ||||||||| ||| ||||||||||| ||||||||||||||    
T  33892033 ttagggttaaataagtaaatagttctcttaaatataccaacatttgattttagtcccctcaaaatattctttaggtttttggtccttctaaaaattttca 33892132  T
Q  177 tatgtgaa---agtccctgctctacattgaacattacaccagagcagggactaatttcatcgctgaaaatttttaga 250  Q
    | | ||||   ||||| | |||||||||||  |||| || ||| ||||||||||||||||   |||||| |||||||    
T  33892133 tctatgaaattagtccatactctacattgagtattagactagatcagggactaatttcataaatgaaaaattttaga 33892209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 80 - 219
Target Start/End: Original strand, 9861568 - 9861710
Alignment:
Q  80 gggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcatat 179  Q
    |||||||||| ||||||  ||||  |||||| | |||||||| ||||||||| || |||||||||| ||| | ||||||||||||||||| ||||||| |    
T  9861568 gggttaaataagtaaatagtcctcctaaatatatcaacatttgattttagtccctataaaatattctttaggcttttggtccctctaaaatttttcattt 9861667  T
Q  180 gtgaa---agtccctgctctacattgaacattacaccagagca 219  Q
     ||||   ||||||||||||||||| |  ||||||| ||||||    
T  9861668 atgaaattagtccctgctctacattaagtattacactagagca 9861710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 113 - 170
Target Start/End: Original strand, 36874343 - 36874400
Alignment:
Q  113 ccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaa 170  Q
    ||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||    
T  36874343 ccaacatttaattttagttcctctaaaatattccttaggtttttggtccctctaaaaa 36874400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 78 - 177
Target Start/End: Complemental strand, 37037360 - 37037263
Alignment:
Q  78 tagggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcat 177  Q
    |||||||||||| ||||||| || || ||||||  ||||||||| ||||||||| ||||||||||||||||||  ||||||||||| ||||| |||||||    
T  37037360 tagggttaaataagtaaatggtc-ttctaaatattccaacatttgattttagtccctctaaaatattccttatacttttggtccct-taaaatttttcat 37037263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 112 - 250
Target Start/End: Original strand, 10069883 - 10070032
Alignment:
Q  112 accaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcatatgtgaa-----------agtccctgctctacat 200  Q
    |||||||||||||||||  | ||||||||||||| ||| | ||||||||| ||||||| ||||||| | ||||           ||||  ||||||||||    
T  10069883 accaacatttaattttaacccctctaaaatattctttaggattttggtccttctaaaatttttcatctatgaattcaattaattagtctatgctctacat 10069982  T
Q  201 tgaacattacaccagagcagggactaatttcatcgctgaaaatttttaga 250  Q
    |||  ||||||| |||||||||||||||||||| | |||||| |||||||    
T  10069983 tgagtattacactagagcagggactaatttcatagatgaaaaattttaga 10070032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 174
Target Start/End: Original strand, 29242427 - 29242525
Alignment:
Q  75 aattagggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaatttt 174  Q
    ||||||||||||||| |||| |  ||| | |||| | |||||||||| ||||||||| ||||||||||||| ||| | ||||||| ||||||||| ||||    
T  29242427 aattagggttaaataagtaacttgtccctctaaa-ataccaacattttattttagtccctctaaaatattcattaggcttttggttcctctaaaagtttt 29242525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 177
Target Start/End: Complemental strand, 29242894 - 29242831
Alignment:
Q  114 caacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcat 177  Q
    |||||||| ||||||||| |||||||| ||| |||| ||||| |||||||| ||||||||||||    
T  29242894 caacatttgattttagtccctctaaaaaatttcttaggttttcggtccctccaaaaattttcat 29242831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 80 - 170
Target Start/End: Original strand, 31212313 - 31212403
Alignment:
Q  80 gggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaa 170  Q
    |||||||||| ||||||  |||  ||||||| | |||||||| ||||||||| |  |||||||||| ||| | ||||||||||||||||||    
T  31212313 gggttaaataagtaaatagtccccttaaatatatcaacatttgattttagtccccataaaatattctttaggcttttggtccctctaaaaa 31212403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 197
Target Start/End: Complemental strand, 10070090 - 10069995
Alignment:
Q  105 taaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcatatgtgaa---agtccctgctcta 197  Q
    |||||| ||||| |||| |||||| ||   ||||||||||  ||| ||||||||||||||||||| ||||||| | ||||   |||||||||||||    
T  10070090 taaatataccaatattttattttaatcctcctaaaatattttttaggtttttggtccctctaaaatttttcatctatgaaattagtccctgctcta 10069995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 174
Target Start/End: Original strand, 15229613 - 15229710
Alignment:
Q  77 ttagggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaatttt 174  Q
    ||||||||||||| ||||||  | |  ||||||| |||||||||| ||||||||| || |||||||||| ||    ||||| ||||||||||| ||||    
T  15229613 ttagggttaaataagtaaatagttcccttaaatataccaacattttattttagtccctataaaatattcttttgacttttgatccctctaaaattttt 15229710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 177
Target Start/End: Complemental strand, 6906504 - 6906432
Alignment:
Q  105 taaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcat 177  Q
    |||||| |||||||||| ||||||||| |  |||||||||  ||| | ||||| |||||| ||||||||||||    
T  6906504 taaatataccaacatttgattttagtccccataaaatattttttaggcttttgatccctccaaaaattttcat 6906432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 177
Target Start/End: Original strand, 8791735 - 8791807
Alignment:
Q  105 taaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcat 177  Q
    |||||| | |||||||| |||||| || | | ||||||||  ||| ||||||||||||||||||| |||||||    
T  8791735 taaatatatcaacatttgattttactcaccccaaaatatttgttaggtttttggtccctctaaaatttttcat 8791807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 177
Target Start/End: Complemental strand, 27503745 - 27503649
Alignment:
Q  81 ggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcat 177  Q
    ||||||||| ||||||||| |  ||||||| | ||| |||| |||||||| ||  |||||||||  ||| | ||||||||||||| ||| |||||||    
T  27503745 ggttaaataagtaaatgattcacttaaatatatcaatatttgattttagtttccataaaatattatttaggcttttggtccctctgaaatttttcat 27503649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 148
Target Start/End: Original strand, 36102133 - 36102201
Alignment:
Q  80 gggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattcctt 148  Q
    |||||||||||||   |||||| | |||||| |||||| ||| ||||||||| ||||||||| ||||||    
T  36102133 gggttaaatatgtttttgatccctataaatataccaacttttcattttagtccctctaaaattttcctt 36102201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 79 - 177
Target Start/End: Complemental strand, 8896124 - 8896026
Alignment:
Q  79 agggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcat 177  Q
    ||||||||||| |||| ||||| | |||||||||||||||||||||||||||||| ||||||||||| ||| | |||||||| || |||||| ||||||    
T  8896124 agggttaaataagtaagtgatcatcttaaatacaccaacatttaattttagtctccctaaaatattctttaagcttttggtctctttaaaaaatttcat 8896026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 77 - 233
Target Start/End: Original strand, 4304140 - 4304299
Alignment:
Q  77 ttagggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttca 176  Q
    |||||||||||||  |||||  |||  ||||||| |||||||||| |||||||||   |||||||||| |||| | ||||||||| ||||||| ||| ||    
T  4304140 ttagggttaaataaataaatcgtccccttaaatataccaacatttgattttagtcctcctaaaatatttcttaagcttttggtccttctaaaattttaca 4304239  T
Q  177 tatgtgaa---agtccctgctctacattgaacattacaccagagcagggactaatttcat 233  Q
    ||| ||||   ||||| |||||||||||||  ||||||| ||||||| ||||||||||||    
T  4304240 tatatgaaattagtccatgctctacattgagtattacactagagcagagactaatttcat 4304299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 81 - 169
Target Start/End: Original strand, 30430271 - 30430359
Alignment:
Q  81 ggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaa 169  Q
    ||||||||| ||||||| ||| | |||||| |||||||||| ||||||||  ||||||||||||| ||| | |||||||||||||||||    
T  30430271 ggttaaataagtaaatggtccctctaaatataccaacatttgattttagttcctctaaaatattctttaggcttttggtccctctaaaa 30430359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 82 - 169
Target Start/End: Original strand, 2928096 - 2928183
Alignment:
Q  82 gttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaa 169  Q
    |||||||| ||||||| ||||  |||||| |||||||||| ||| ||||| ||||||||| ||||||| | |||||||||||| ||||    
T  2928096 gttaaataagtaaatggtcctcctaaatataccaacatttgattctagtccctctaaaattttccttaggcttttggtccctccaaaa 2928183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 78 - 177
Target Start/End: Complemental strand, 6931198 - 6931099
Alignment:
Q  78 tagggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcat 177  Q
    |||||||||||| ||||||  |||| ||||||| || ||||||| ||||||||| || ||||| ||| |||| ||||||| || |||||||| |||||||    
T  6931198 tagggttaaataagtaaatagtcctcttaaatatactaacatttgattttagtccctttaaaacatttcttaggtttttgatctctctaaaatttttcat 6931099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 177
Target Start/End: Complemental strand, 28725734 - 28725670
Alignment:
Q  112 accaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcat 177  Q
    |||||||||| ||||||||||| | ||||||||| ||| |||||||||||||| ||||| ||||||    
T  28725734 accaacatttgattttagtctccc-aaaatattcattaggtttttggtccctccaaaaaatttcat 28725670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 170
Target Start/End: Complemental strand, 4304404 - 4304310
Alignment:
Q  79 agggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgttttt---ggtccctctaaaaa 170  Q
    ||||||||||| |||||| |||    |||||| |||||||||| ||||||||| ||||||||||||| |||  |||||   ||||||||||||||    
T  4304404 agggttaaataagtaaataatctccctaaatataccaacatttgattttagtccctctaaaatattcattagatttttggcggtccctctaaaaa 4304310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 25799553 - 25799513
Alignment:
Q  105 taaatacaccaacatttaattttagtctctctaaaatattc 145  Q
    |||||| ||||||||||||||||||||||| ||||||||||    
T  25799553 taaatataccaacatttaattttagtctctttaaaatattc 25799513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 46835629 - 46835708
Alignment:
Q  69 gaaaagaattagggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattcctt 148  Q
    ||||| || |||||||||||||||   |||||||| |||||| |||||| |||  ||||| |||||||||||| ||||||    
T  46835629 gaaaaaaaatagggttaaatatgtttttgatccttataaatataccaactttttgttttaatctctctaaaattttcctt 46835708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 177
Target Start/End: Complemental strand, 32619043 - 32618945
Alignment:
Q  79 agggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcat 177  Q
    ||||||||||| ||||||  | | | |||||| | |||||||| |||||||||| |||||||||||  |||  ||||| || ||||||||| |||||||    
T  32619043 agggttaaataagtaaatagttcatctaaatatatcaacatttgattttagtctttctaaaatattttttagatttttagttcctctaaaatttttcat 32618945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 45404832 - 45404886
Alignment:
Q  115 aacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaa 169  Q
    ||||||| ||||||||||| |||||||||||||||  ||| ||||||||| ||||    
T  45404832 aacatttgattttagtctccctaaaatattccttagatttctggtccctccaaaa 45404886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 250
Target Start/End: Original strand, 10821864 - 10822003
Alignment:
Q  114 caacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcatatgtgaa---agtccctgctctacattgaacattac 210  Q
    |||||||| ||||||||| |  |||||||||  ||| | |||||||||||||||||| |||||| | ||||   |||| || | |||||||| | |||||    
T  10821864 caacattttattttagtcaccgtaaaatattttttaggcttttggtccctctaaaaaatttcatctatgaaattagtcgcttccctacattggatattac 10821963  T
Q  211 accagagcagggactaatttcatcgctgaaaatttttaga 250  Q
    || | || || ||||||||||||   |||||| |||||||    
T  10821964 actacagtagagactaatttcatatatgaaaaattttaga 10822003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 159
Target Start/End: Original strand, 30172069 - 30172150
Alignment:
Q  78 tagggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggt 159  Q
    |||||||||||| ||||||| |||   |||||| | |||||||| ||||||||| |  |||||||||| ||| |||||||||    
T  30172069 tagggttaaataagtaaatggtccccctaaatatatcaacatttgattttagtccccttaaaatattctttaggtttttggt 30172150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 148
Target Start/End: Original strand, 43862527 - 43862596
Alignment:
Q  79 agggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattcctt 148  Q
    ||||||||||||||   || ||||| |||||| |||||| ||| ||||||||| ||||||||| ||||||    
T  43862527 agggttaaatatgtttttggtccttataaatataccaacttttcattttagtccctctaaaattttcctt 43862596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 27614039 - 27614079
Alignment:
Q  105 taaatacaccaacatttaattttagtctctctaaaatattc 145  Q
    |||||| ||||||||||||||||||||||  ||||||||||    
T  27614039 taaatataccaacatttaattttagtctccataaaatattc 27614079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 81 - 250
Target Start/End: Original strand, 980920 - 981090
Alignment:
Q  81 ggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcatatg 180  Q
    ||||||||| ||||||||||| |||||||| | |||||||| ||||||||| |||||||||||| |||| | |||||||||| ||||||| ||| || |     
T  980920 ggttaaataagtaaatgatccctttaaatatatcaacatttgattttagtc-ctctaaaatatttcttaggcttttggtccc-ctaaaaaattttatcta 981017  T
Q  181 tgaa---agtccctgctctacattgaacattacaccagagcagggactaatttcatcgctgaaaatttttaga 250  Q
    ||||   |||| |||||| |||||||  ||||||| ||||||| ||||||||||||   |||||| |||||||    
T  981018 tgaaattagtctctgctcaacattgagtattacactagagcagagactaatttcataaatgaaaaattttaga 981090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 105 - 177
Target Start/End: Original strand, 37897600 - 37897672
Alignment:
Q  105 taaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcat 177  Q
    |||||| |||||||||| |||||| || ||||||||||||||||| ||||| |||||||||||||||||||||    
T  37897600 taaatagaccaacatttgattttactccctctaaaatattccttaggttttcggtccctctaaaaattttcat 37897672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 105 - 250
Target Start/End: Original strand, 12874705 - 12874853
Alignment:
Q  105 taaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcatatgtgaaa---gtccctgctctacatt 201  Q
    |||||| |||||||||| ||||| ||| || |||||||| |||||   |||||||| ||||||||| |||||| | |||||   ||| ||||||||||||    
T  12874705 taaatataccaacatttgattttggtccctttaaaatatcccttagacttttggtctctctaaaaaatttcatctatgaaattagtctctgctctacatt 12874804  T
Q  202 gaacattacaccagagcagggactaatttcatcgctgaaaatttttaga 250  Q
    ||   |||||| ||||||||||||||||||||   |||||| |||||||    
T  12874805 gagtcttacactagagcagggactaatttcataaatgaaaacttttaga 12874853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 78 - 177
Target Start/End: Complemental strand, 16192671 - 16192571
Alignment:
Q  78 tagggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatg-tttttggtccctctaaaaattttca 176  Q
    |||||||||||| ||||||  |||| ||||||| | |||||||| ||||||||||| ||||||||||||||| | ||||||||| ||| ||||| |||||    
T  16192671 tagggttaaataagtaaatagtcctcttaaatatatcaacatttgattttagtctccctaaaatattccttaggctttttggtctctccaaaaaatttca 16192572  T
Q  177 t 177  Q
    |    
T  16192571 t 16192571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 121 - 212
Target Start/End: Complemental strand, 25330769 - 25330675
Alignment:
Q  121 taattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcatatgtgaa---agtccctgctctacattgaacattacac 212  Q
    ||||||||||| || |||||||||  ||| ||||||||||| ||||||||||||||| | ||||   |||||||||||||||||||| |||||||    
T  25330769 taattttagtccctttaaaatattttttaggtttttggtccttctaaaaattttcatttatgaaattagtccctgctctacattgaatattacac 25330675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 77 - 149
Target Start/End: Original strand, 39786313 - 39786385
Alignment:
Q  77 ttagggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattcctta 149  Q
    ||||||||||||| |||||| ||||| ||||||| |||||||||| ||||||||||| ||||||| |||||||    
T  39786313 ttagggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttcctta 39786385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 78 - 169
Target Start/End: Original strand, 18509495 - 18509586
Alignment:
Q  78 tagggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaa 169  Q
    ||||||||||||  |||||| |||   |||||| |||||||||| ||||||||| ||||||||||||||||  |||||||||||||| ||||    
T  18509495 tagggttaaataattaaatggtccccctaaatataccaacatttgattttagtccctctaaaatattcctttggtttttggtccctccaaaa 18509586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 197
Target Start/End: Complemental strand, 12874910 - 12874816
Alignment:
Q  106 aaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcatatgtgaa---agtccctgctcta 197  Q
    ||||| ||||| |||| ||||||||| ||||||||||||  ||| ||||||||||||||||||| ||||||| | ||||   |||||||||||||    
T  12874910 aaatataccaatatttgattttagtccctctaaaatattatttaggtttttggtccctctaaaagttttcatttatgaaattagtccctgctcta 12874816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 82 - 177
Target Start/End: Original strand, 16127920 - 16128015
Alignment:
Q  82 gttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcat 177  Q
    |||||||| ||||||  |||  ||||||| ||||||||||||||||||||   ||||||||||   || ||||||||||||||||||| |||||||    
T  16127920 gttaaataagtaaatagtccccttaaatataccaacatttaattttagtcctcctaaaatattatgtaggtttttggtccctctaaaatttttcat 16128015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 104 - 170
Target Start/End: Complemental strand, 27848064 - 27847998
Alignment:
Q  104 ttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaa 170  Q
    ||||||| |||||||||| |||||||||||| ||||||||| |||| | |||||||||||| |||||    
T  27848064 ttaaatataccaacatttgattttagtctctttaaaatattacttaagcttttggtccctccaaaaa 27847998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 105 - 177
Target Start/End: Complemental strand, 981147 - 981076
Alignment:
Q  105 taaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcat 177  Q
    |||||| |||||||||| ||||||||| | ||||||||||| ||| | ||||||||||||||||| |||||||    
T  981147 taaatataccaacatttgattttagtccc-ctaaaatattctttaggcttttggtccctctaaaatttttcat 981076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 250
Target Start/End: Complemental strand, 16128169 - 16128001
Alignment:
Q  84 taaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcatatgtga 183  Q
    |||||| ||||||||||||  | |||| ||||| |||| |||||| || || |||||||||| ||| |||| |||| | ||||| | ||||||| | |||    
T  16128169 taaataagtaaatgatcctcgtgaatataccaaaatttgattttaatc-ctttaaaatattctttaggtttctggttcttctaacatttttcatttatga 16128071  T
Q  184 aa---gtccctgctctacattgaacattacaccagagcagggactaatttcatcgctgaaaatttttaga 250  Q
    ||   ||| |||||||||||||||  |||||| |||| || ||||||||||||   |||||| |||||||    
T  16128070 aattagtctctgctctacattgaattttacactagagaagagactaatttcataaatgaaaaattttaga 16128001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 177
Target Start/End: Original strand, 40152701 - 40152795
Alignment:
Q  82 gttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcat 177  Q
    |||||||| ||||||| |||||| ||||| || ||||||| |||||||||   |||||||||||||||  ||||| ||||||| |||| |||||||    
T  40152701 gttaaataagtaaatggtccttt-aaatatacaaacattttattttagtcctcctaaaatattccttagattttttgtccctccaaaatttttcat 40152795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 250
Target Start/End: Original strand, 4921271 - 4921336
Alignment:
Q  185 agtccctgctctacattgaacattacaccagagcagggactaatttcatcgctgaaaatttttaga 250  Q
    ||||| |||||||||||||  ||||||| |||| ||| ||||||||||| | ||||||||||||||    
T  4921271 agtccatgctctacattgagtattacactagagtaggaactaatttcatagatgaaaatttttaga 4921336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 169
Target Start/End: Complemental strand, 20972478 - 20972389
Alignment:
Q  80 gggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaa 169  Q
    |||||||||| || |||| ||| |||||||| | |||||||| ||||||||| |   |||||||| |||| |||||||||||| ||||||    
T  20972478 gggttaaataagtgaatggtccctttaaatatatcaacatttgattttagtccccaaaaaatatttcttaggtttttggtcccgctaaaa 20972389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 27847882 - 27847946
Alignment:
Q  105 taaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaa 169  Q
    |||||| |||||||||| |||||||||    |||||||||||||| ||||||||||||| |||||    
T  27847882 taaatataccaacatttgattttagtccacttaaaatattccttaagtttttggtccctttaaaa 27847946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 203
Target Start/End: Original strand, 7328331 - 7328459
Alignment:
Q  78 tagggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattcct-tatgtttttggtccctctaaaaattttca 176  Q
    |||||||||||| ||||| |||||| | ||||| |||| ||||| |||| |||| ||| ||||||||  | || |||||| |||||||||||| ||||||    
T  7328331 tagggttaaataagtaaacgatcctat-aaatataccatcatttgatttcagtccctccaaaatatttttgtaggtttttagtccctctaaaatttttca 7328429  T
Q  177 tatgtgaa---agtccctgctctacattga 203  Q
    | | ||||   |||||||| ||||||||||    
T  7328430 tttatgaaattagtccctgttctacattga 7328459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 233
Target Start/End: Complemental strand, 35926955 - 35926824
Alignment:
Q  105 taaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcatatgtgaa---agtccctgctctacatt 201  Q
    |||||| |||||||||| |||||||||||  |||||||||  ||| ||||||| |  |||||||| |||| || | ||||   ||||  ||||||||||     
T  35926955 taaatataccaacatttgattttagtctcaataaaatattttttaggtttttgatttctctaaaattttttatttatgaaattagtctttgctctacatc 35926856  T
Q  202 gaacattacaccagagcagggactaatttcat 233  Q
    ||| |||| || |||| || ||||||||||||    
T  35926855 gaatattatactagagtagagactaatttcat 35926824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 35926749 - 35926813
Alignment:
Q  105 taaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaa 169  Q
    |||||| |||||||||| |||||||||||  |||||||||  ||| |||||| || |||||||||    
T  35926749 taaatataccaacatttgattttagtctccataaaatattttttaggtttttagttcctctaaaa 35926813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 212
Target Start/End: Complemental strand, 39159294 - 39159216
Alignment:
Q  137 aaaatattccttatgtttttggtccctctaaaaattttcatatgtgaa---agtccctgctctacattgaacattacac 212  Q
    ||||||||| ||| | |||||||||||| ||||| ||||||   ||||   |||||||||||||||||||| |||||||    
T  39159294 aaaatattctttaggattttggtccctccaaaaaatttcatccatgaaattagtccctgctctacattgaatattacac 39159216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 233
Target Start/End: Complemental strand, 31172433 - 31172275
Alignment:
Q  78 tagggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcat 177  Q
    |||| ||||||| ||||||||||| |||||||| || ||||||| |||||| ||   ||||||||||  ||| |||||||||||||||||||||||||||    
T  31172433 taggattaaataagtaaatgatccctttaaatatacaaacatttgattttaatcctcctaaaatattttttaggtttttggtccctctaaaaattttcat 31172334  T
Q  178 atgtgaa---agtccctgctctacattgaacattacaccagagcagggactaatttcat 233  Q
     |   ||   || || |||||||||||||  ||||||| ||||||| ||||||||||||    
T  31172333 ctagaaaattagaccttgctctacattgagtattacactagagcagagactaatttcat 31172275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 80 - 250
Target Start/End: Complemental strand, 31198553 - 31198381
Alignment:
Q  80 gggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctc-taaaatattccttatgtttttggtccctctaaaaattttcata 178  Q
    |||||||||| ||||||  ||| |||||||| |||||||||| |||||||| |||| ||||||||| |||| | |||||| |||||||||| |||||||     
T  31198553 gggttaaataagtaaatagtccctttaaatataccaacatttgattttagt-tctcctaaaatatttcttaggcttttgg-ccctctaaaatttttcatc 31198456  T
Q  179 tgtgaaa---gtccctgctctacattgaacattacaccagagcagggactaatttcatcgctgaaaatttttaga 250  Q
    | |||||   |||||||||||| |||||  ||||||  |||||||||| |||||||||   |||||| |||||||    
T  31198455 tatgaaattagtccctgctctatattgagtattacattagagcagggattaatttcataaatgaaaaattttaga 31198381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 78 - 246
Target Start/End: Original strand, 19105254 - 19105424
Alignment:
Q  78 tagggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcat 177  Q
    |||||||||||| ||||| |||||   |||||| || ||||||  ||||||||| ||||||||||||| ||| | |||||||||||||| || |||||||    
T  19105254 tagggttaaataagtaaaagatccgcataaatatactaacattcgattttagtc-ctctaaaatattctttaggcttttggtccctctataatttttcat 19105352  T
Q  178 atgtgaa---agtccctgctctacattgaacattacaccagagcagggactaatttcatcgctgaaaatttt 246  Q
     | ||||   ||||  |||||||||||||  ||||||| ||||||  ||||||||||||   ||||||||||    
T  19105353 ttatgaaattagtcaatgctctacattgagtattacactagagcatagactaatttcataaatgaaaatttt 19105424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 81 - 250
Target Start/End: Complemental strand, 9686540 - 9686376
Alignment:
Q  81 ggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcatatg 180  Q
    ||||||||| ||||||  ||||  |||||| | ||| |||| ||||||||| |  |||||||||  ||| | ||||||||| ||||||| ||||||| |     
T  9686540 ggttaaataagtaaatagtcctcctaaatatatcaatatttgattttagtccccataaaatattatttaggcttttggtccttctaaaatttttcattt- 9686442  T
Q  181 tgaaagtccctgctctacattgaacattacaccagagcagggactaatttcatcgctgaaaatttttaga 250  Q
        |||||||||||||||||||  ||||||| ||||||| ||||||||||||   |||||| |||||||    
T  9686441 ----agtccctgctctacattgagtattacactagagcagagactaatttcataaatgaaaaattttaga 9686376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 177
Target Start/End: Complemental strand, 7760828 - 7760756
Alignment:
Q  105 taaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcat 177  Q
    |||||| |||||||||| ||||||||| || ||||||||| |||| | |||||||||||| ||||||||||||    
T  7760828 taaatataccaacatttgattttagtccctataaaatatttcttaggcttttggtccctccaaaaattttcat 7760756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 177
Target Start/End: Original strand, 20164620 - 20164716
Alignment:
Q  81 ggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcat 177  Q
    ||||||||| ||||||| |||  | ||||| |||||||||| |||||||||  | |||||| ||||||| |||||||||||||| |||| |||||||    
T  20164620 ggttaaataagtaaatggtcccctaaaatataccaacatttgattttagtcattttaaaattttccttaagtttttggtccctccaaaatttttcat 20164716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 169
Target Start/End: Original strand, 7760607 - 7760697
Alignment:
Q  79 agggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaa 169  Q
    ||||||||||| |||||| |||||| |||||| |||| ||| | ||||||||| | ||||||||||| ||| | |||||||||||| ||||    
T  7760607 agggttaaataagtaaataatccttctaaatataccagcatatgattttagtccccctaaaatattctttaggcttttggtccctccaaaa 7760697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 80 - 178
Target Start/End: Original strand, 29635235 - 29635332
Alignment:
Q  80 gggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcata 178  Q
    |||||||||| ||||||| |||   |||||| | |||||||| ||||||||| | |||||||||||||||   ||||||||||||||||| ||||||||    
T  29635235 gggttaaataagtaaatggtccccctaaatatatcaacatttgattttagtccc-ctaaaatattccttagacttttggtccctctaaaatttttcata 29635332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 166
Target Start/End: Complemental strand, 20165072 - 20165011
Alignment:
Q  105 taaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctcta 166  Q
    |||||| |||||||||| ||||||||| ||||||||||||| ||| ||||||| ||||||||    
T  20165072 taaatataccaacatttgattttagtccctctaaaatattcattaggtttttgatccctcta 20165011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 23797275 - 23797206
Alignment:
Q  105 taaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaatttt 174  Q
    |||||| | |||||||| ||||||||| |||||||||||| ||||  |||||||||||||||||| ||||    
T  23797275 taaatatatcaacatttgattttagtccctctaaaatatttcttagatttttggtccctctaaaactttt 23797206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 80 - 233
Target Start/End: Original strand, 8129879 - 8130034
Alignment:
Q  80 gggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcatat 179  Q
    |||||||||| |||||||||| |  |||||  |||||||||| |||||| ||  | ||||||||| |||    ||||||| |||||||||  |||||| |    
T  8129879 gggttaaataagtaaatgatc-tcctaaatctaccaacatttgattttaatccttttaaaatatttctttgacttttggttcctctaaaatctttcattt 8129977  T
Q  180 gtgaaa---gtccctgctctacattgaacattacaccagagcagggactaatttcat 233  Q
     |||||   ||| ||||||||||||||| ||||||| ||||||  ||||||||||||    
T  8129978 atgaaattcgtctctgctctacattgaatattacactagagcaatgactaatttcat 8130034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 177
Target Start/End: Original strand, 15329854 - 15329955
Alignment:
Q  77 ttagggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattcctt-atgtttttggtccctctaaaaattttc 175  Q
    ||||||||||||||| ||||  |||  ||||||| |||||||||| ||||||||| | | || ||||| ||| | ||||||||||| || ||||||||||    
T  15329854 ttagggttaaatatggaaatagtccccttaaatataccaacatttgattttagtcccccaaagatattacttaaggtttttggtccatccaaaaattttc 15329953  T
Q  176 at 177  Q
    ||    
T  15329954 at 15329955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 177
Target Start/End: Original strand, 31198323 - 31198395
Alignment:
Q  105 taaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcat 177  Q
    |||||| |||||||||| |||||||||  |||||||||||  ||| ||| ||| ||||||||||| |||||||    
T  31198323 taaatataccaacatttgattttagtccttctaaaatattttttaggttattgatccctctaaaatttttcat 31198395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 169
Target Start/End: Complemental strand, 37081325 - 37081261
Alignment:
Q  105 taaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaa 169  Q
    |||||| | |||| ||| ||||||||| | | ||||||||||||| |||||||||||||||||||    
T  37081325 taaatatatcaacgtttgattttagtcccccaaaaatattccttaggtttttggtccctctaaaa 37081261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 164
Target Start/End: Original strand, 3555362 - 3555448
Alignment:
Q  77 ttagggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctc 164  Q
    ||||||||||||| | ||||| |||   |||||| |||||||||| ||||||||| | |||||||||| |||| | ||||||||||||    
T  3555362 ttagggttaaataagcaaatggtccccctaaatataccaacatttgattttagtccccctaaaatatttctta-ggttttggtccctc 3555448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 169
Target Start/End: Complemental strand, 19105515 - 19105421
Alignment:
Q  75 aattagggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaa 169  Q
    ||||||||||||||| ||||||  |||   |||||| |||||| ||| ||||||||| |  |||| ||||| ||| | |||||||||||||||||    
T  19105515 aattagggttaaataagtaaatagtccccctaaatataccaacttttgattttagtccccttaaactattctttaggcttttggtccctctaaaa 19105421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 233
Target Start/End: Original strand, 21657294 - 21657453
Alignment:
Q  77 ttagggttaaatatgtaaatgatccttttaaatacaccaacatttaattttag-tctctctaaaatattccttatgtttttggtccctctaaaaattttc 175  Q
    ||||||||||||| ||||||| ||||  |||||| | |||||||||| ||||| || || |||||||||| |||   ||||||| | || ||||||||||    
T  21657294 ttagggttaaataagtaaatggtcctcctaaatatatcaacatttaactttagctccct-taaaatattctttagacttttggttcttcaaaaaattttc 21657392  T
Q  176 atatgtgaa---agtccctgctctacattgaacattacaccagagcagggactaatttcat 233  Q
    || | ||||   |||| ||||||||||||||  ||||||  ||| | || |||||||||||    
T  21657393 atttatgaaattagtctctgctctacattgagtattacattagaacgggcactaatttcat 21657453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 171
Target Start/End: Original strand, 35054442 - 35054536
Alignment:
Q  77 ttagggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaat 171  Q
    ||||||||||||| ||||||  | ||| |||||| || |||||||||||||  || || |||||||||| |||   ||||||| |||||||||||    
T  35054442 ttagggttaaataagtaaatagttcttctaaatatactaacatttaattttgatccctttaaaatattctttagacttttggttcctctaaaaat 35054536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 148
Target Start/End: Complemental strand, 43726066 - 43725998
Alignment:
Q  80 gggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattcctt 148  Q
    |||||||||||||   | |||||| |||||| |||||| |||  |||||||||||||||||| ||||||    
T  43726066 gggttaaatatgtttttaatccttataaatataccaacttttcgttttagtctctctaaaattttcctt 43725998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 78 - 169
Target Start/End: Original strand, 31298722 - 31298813
Alignment:
Q  78 tagggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaa 169  Q
    |||||||||||| ||||||||||  |||||| | ||||||||||||||||| || |||||||||||| |||| | |||||||||||||||||    
T  31298722 tagggttaaataagtaaatgatctctttaaaaataccaacatttaattttaatccctctaaaatatttcttaggcttttggtccctctaaaa 31298813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 82 - 250
Target Start/End: Original strand, 13340445 - 13340616
Alignment:
Q  82 gttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcatatgt 181  Q
    |||||||| ||||||  |||  ||||||| |||||||||| ||||||||| || ||||| |||| ||| | |||||||||||| |||| ||||||  |      
T  13340445 gttaaataagtaaatagtccccttaaatataccaacatttgattttagtccctataaaacattctttaggcttttggtccctccaaaatttttcaattaa 13340544  T
Q  182 gaa---agtccctgctctacattgaacattacaccagagcagggactaatttcatcgctgaaaatttttaga 250  Q
    |||   ||| |||||||||||||||  ||||||| ||||||||||||||||||||   ||||| ||||||||    
T  13340545 gaaattagttcctgctctacattgagtattacactagagcagggactaatttcataaatgaaattttttaga 13340616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 77 - 197
Target Start/End: Complemental strand, 13340702 - 13340579
Alignment:
Q  77 ttagggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttca 176  Q
    ||||||||||||||| ||||  |||  ||||||| || ||||||| ||||||||| |  |||||||||| ||| |||||||||||||||||||| |||||    
T  13340702 ttagggttaaatatgaaaatagtccccttaaatatactaacatttgattttagtccccataaaatattctttaggtttttggtccctctaaaaaatttca 13340603  T
Q  177 tatgtgaa---agtccctgctcta 197  Q
    | | ||||   |||||||||||||    
T  13340602 tttatgaaattagtccctgctcta 13340579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 80 - 177
Target Start/End: Original strand, 30519681 - 30519777
Alignment:
Q  80 gggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcat 177  Q
    |||||||||| ||||||| || | | ||||| |||||||||| |||||| ||||| |||||||||  ||| ||||||||||||||||||| |||||||    
T  30519681 gggttaaataagtaaatggtcgtct-aaatataccaacatttgattttaatctctttaaaatattatttaagtttttggtccctctaaaatttttcat 30519777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 78 - 177
Target Start/End: Complemental strand, 31298982 - 31298883
Alignment:
Q  78 tagggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcat 177  Q
    |||||||||||| ||||||  ||| |||||||| ||||| |||| ||||||||  ||||||||||||| ||| | ||||| ||||||||||  |||||||    
T  31298982 tagggttaaataagtaaatagtccctttaaatataccaatatttgattttagttcctctaaaatattctttaggcttttgctccctctaaattttttcat 31298883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 24704332 - 24704396
Alignment:
Q  105 taaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaa 169  Q
    |||||| ||||| |||| ||||||||||| ||||||||||  ||||| |||||||||||||||||    
T  24704332 taaatataccaatatttgattttagtctccctaaaatattatttatgcttttggtccctctaaaa 24704396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 170
Target Start/End: Complemental strand, 12290227 - 12290135
Alignment:
Q  77 ttagggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaa 170  Q
    ||||||||||||| |||||||||||  | ||||| |||||||||||||||||||  |||||||| | | |||  | ||||||||||| ||||||    
T  12290227 ttagggttaaataagtaaatgatcccct-aaatataccaacatttaattttagttcctctaaaacaattctttcgcttttggtccctttaaaaa 12290135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 177
Target Start/End: Original strand, 12290005 - 12290077
Alignment:
Q  105 taaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcat 177  Q
    |||||| |||||||||| ||||||| ||  |||||||||||| || ||||||| |||||  ||||||||||||    
T  12290005 taaatataccaacatttgattttagcctgcctaaaatattccctaggtttttgatcccttcaaaaattttcat 12290077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 165
Target Start/End: Complemental strand, 33599935 - 33599847
Alignment:
Q  77 ttagggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctct 165  Q
    ||||||||||||||||   |||||| | |||||| |||||| |||  |||||||||||||||||| ||||||    |||||||||||||    
T  33599935 ttagggttaaatatgtttttgatccctataaatataccaacttttcgttttagtctctctaaaattttccttcaacttttggtccctct 33599847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 177
Target Start/End: Complemental strand, 34637655 - 34637583
Alignment:
Q  105 taaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcat 177  Q
    |||||| | |||||||| ||||||||  | ||||||||||| | | ||||||||||||||||||| |||||||    
T  34637655 taaatatatcaacatttgattttagttcccctaaaatattcttgaggtttttggtccctctaaaatttttcat 34637583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 177
Target Start/End: Complemental strand, 10284447 - 10284361
Alignment:
Q  91 gtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcat 177  Q
    |||||||||||  |||||||||  ||||||| |||||| ||||  ||||||||||  || ||| ||||||| ||||| |||||||||    
T  10284447 gtaaatgatccccttaaatacagtaacatttgattttaatctccttaaaatattctataggttgttggtccttctaagaattttcat 10284361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 177
Target Start/End: Complemental strand, 19045114 - 19045049
Alignment:
Q  112 accaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcat 177  Q
    |||||||||| |||||||||  ||||||||||| |||||||||| | | |||| ||||| ||||||    
T  19045114 accaacatttgattttagtccttctaaaatatttcttatgttttcgatacctcaaaaaaatttcat 19045049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 75 - 177
Target Start/End: Complemental strand, 22679587 - 22679485
Alignment:
Q  75 aattagggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaatttt 174  Q
    |||||| |||||||| ||||| |||||   |||||| |||||||||| ||||||||| ||||||||||||  ||| ||||||||||||||||||  ||||    
T  22679587 aattagagttaaataagtaaacgatccccctaaatataccaacatttgattttagtccctctaaaatatttgttaggtttttggtccctctaaatttttt 22679488  T
Q  175 cat 177  Q
    |||    
T  22679487 cat 22679485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 75 - 177
Target Start/End: Complemental strand, 30749201 - 30749099
Alignment:
Q  75 aattagggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaatttt 174  Q
    ||||||||||||||| |||||| |||||  |||||| | |||||||| |||||| |  ||||||||||||  ||||||||||||| ||||||||| ||||    
T  30749201 aattagggttaaatacgtaaataatcctcctaaatatatcaacatttgattttaattcctctaaaatattttttatgtttttggttcctctaaaattttt 30749102  T
Q  175 cat 177  Q
    |||    
T  30749101 cat 30749099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 75 - 177
Target Start/End: Complemental strand, 30770652 - 30770550
Alignment:
Q  75 aattagggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaatttt 174  Q
    ||||||||||||||| |||||| |||||  |||||| | |||||||| |||||| |  ||||||||||||  ||||||||||||| ||||||||| ||||    
T  30770652 aattagggttaaatacgtaaataatcctcctaaatatatcaacatttgattttaattcctctaaaatattttttatgtttttggttcctctaaaattttt 30770553  T
Q  175 cat 177  Q
    |||    
T  30770552 cat 30770550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 133 - 233
Target Start/End: Complemental strand, 51942071 - 51941968
Alignment:
Q  133 ctctaaaatattccttatgtttttggtccctctaaaaattttcatatgtgaaagt---ccctgctctacattgaacattacaccagagcagggactaatt 229  Q
    |||||||||||| |||| ||||||||| ||||||||| ||||||| | ||||| |   ||||||||||||||||  ||||||| |||| |||||||||||    
T  51942071 ctctaaaatatttcttaggtttttggttcctctaaaatttttcatctatgaaattaatccctgctctacattgagtattacactagaggagggactaatt 51941972  T
Q  230 tcat 233  Q
    ||||    
T  51941971 tcat 51941968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 169
Target Start/End: Complemental strand, 16706596 - 16706502
Alignment:
Q  78 tagggttaaatatgtaaatgatccttttaaata---caccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaa 169  Q
    |||||||||||||||||||  |||   ||||||   ||||||||||| ||||||||| | ||||||||||| ||| |||||||||||||||||||    
T  16706596 tagggttaaatatgtaaatagtccccctaaatataccaccaacatttgattttagtccccctaaaatattctttaggtttttggtccctctaaaa 16706502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 78 - 177
Target Start/End: Complemental strand, 14760131 - 14760033
Alignment:
Q  78 tagggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcat 177  Q
    |||||||||||| |||||||||||  ||||||| |||||||||| |||||| || | ||||||||||  ||| | |||||||||| |||||| |||||||    
T  14760131 tagggttaaataagtaaatgatccccttaaatataccaacatttgattttaatccccctaaaatattttttaggcttttggtccc-ctaaaatttttcat 14760033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 203
Target Start/End: Original strand, 13765581 - 13765682
Alignment:
Q  105 taaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcatatgtgaa---agtccctgctctacatt 201  Q
    |||||| |||||||||| ||||||||| |  |||||||||| ||| ||||||||||||| ||| | ||||||| | ||||   ||||||| |||||||||    
T  13765581 taaatataccaacatttgattttagtccccataaaatattctttaggtttttggtccctttaatatttttcatttatgaaattagtccctactctacatt 13765680  T
Q  202 ga 203  Q
    ||    
T  13765681 ga 13765682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 75 - 177
Target Start/End: Complemental strand, 30747021 - 30746920
Alignment:
Q  75 aattagggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaatttt 174  Q
    ||||||||||||||| |||||| ||| | | ||||| |||||||||| ||||||||| ||  |||||||||||||  |||||| |  || ||||||||||    
T  30747021 aattagggttaaataagtaaataatcatct-aaatataccaacatttcattttagtcccttcaaaatattccttagatttttgatttctttaaaaatttt 30746923  T
Q  175 cat 177  Q
    |||    
T  30746922 cat 30746920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 75 - 177
Target Start/End: Complemental strand, 30768472 - 30768371
Alignment:
Q  75 aattagggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaatttt 174  Q
    ||||||||||||||| |||||| ||| | | ||||| |||||||||| ||||||||| ||  |||||||||||||  |||||| |  || ||||||||||    
T  30768472 aattagggttaaataagtaaataatcatct-aaatataccaacatttcattttagtcccttcaaaatattccttagatttttgatttctttaaaaatttt 30768374  T
Q  175 cat 177  Q
    |||    
T  30768373 cat 30768371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 169
Target Start/End: Original strand, 35294332 - 35294422
Alignment:
Q  79 agggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaa 169  Q
    |||||||||||  |||||||||| |||||||| | |||||||| |||||||||  || |||||||| || | | |||||||||||| ||||    
T  35294332 agggttaaataattaaatgatccctttaaatatatcaacatttgattttagtccatcgaaaatatttctgaggcttttggtccctccaaaa 35294422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 177
Target Start/End: Original strand, 30748951 - 30749048
Alignment:
Q  80 gggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcat 177  Q
    |||||||||| ||||||| ||||  |||||| || || |||| ||||||||| | ||||||||||| ||| | |||||||||||  |||| |||||||    
T  30748951 gggttaaataagtaaatggtcctcctaaatatacaaatatttgattttagtccccctaaaatattctttaggcttttggtcccttcaaaatttttcat 30749048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 177
Target Start/End: Original strand, 30770402 - 30770499
Alignment:
Q  80 gggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcat 177  Q
    |||||||||| ||||||| ||||  |||||| || || |||| ||||||||| | ||||||||||| ||| | |||||||||||  |||| |||||||    
T  30770402 gggttaaataagtaaatggtcctcctaaatatacaaatatttgattttagtccccctaaaatattctttaggcttttggtcccttcaaaatttttcat 30770499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 162
Target Start/End: Original strand, 15393145 - 15393227
Alignment:
Q  80 gggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccc 162  Q
    |||||||||| ||||||  ||||   ||||| ||||| |||||||||| ||| | ||||||||||||||| | ||||||||||    
T  15393145 gggttaaataagtaaatagtcctcacaaatataccaatatttaattttcgtccccctaaaatattccttaggcttttggtccc 15393227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 164
Target Start/End: Original strand, 20171415 - 20171472
Alignment:
Q  107 aatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctc 164  Q
    |||| |||||||||| ||||||||| |||||||||||| ||||   ||||||||||||    
T  20171415 aatataccaacatttgattttagtccctctaaaatatttcttagacttttggtccctc 20171472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 51680854 - 51680915
Alignment:
Q  80 gggttaaatatgtaaatgatccttttaaatacaccaacatttaattttagtctctctaaaat 141  Q
    |||||||||||||   |||||||| |||||| |||||| ||| ||||||||| |||||||||    
T  51680854 gggttaaatatgtttttgatccttataaatataccaacttttcattttagtccctctaaaat 51680915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 177
Target Start/End: Complemental strand, 8819414 - 8819351
Alignment:
Q  113 ccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcat 177  Q
    ||||||||| |||||||| ||  |||||||||||||| |||||||| ||||| |||| |||||||    
T  8819414 ccaacatttgattttagtatccataaaatattccttaggtttttgg-ccctccaaaatttttcat 8819351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 63933 - 63990
Alignment:
Q  185 agtccctgctctacattgaacattacaccagagcagggactaatttcatcgctgaaaa 242  Q
    |||||||||||||||||||  ||||||| |||||||||||||||||||| | ||||||    
T  63933 agtccctgctctacattgagtattacactagagcagggactaatttcatagatgaaaa 63990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 197
Target Start/End: Complemental strand, 64056 - 63961
Alignment:
Q  105 taaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaaattttcatatgtgaa---agtccctgctcta 197  Q
    |||||| |||||||||||||||||||  | ||||||||||  ||| |||||| |||||||| ||| ||||||| | ||||   |||||||||||||    
T  64056 taaatataccaacatttaattttagttcccctaaaatattatttaggtttttagtccctctcaaatttttcatctatgaaattagtccctgctcta 63961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 103 - 165
Target Start/End: Complemental strand, 11685 - 11623
Alignment:
Q  103 tttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctct 165  Q
    |||||||| || || |||| ||||||||| |||||||||||| |||| |||||||||||||||    
T  11685 tttaaatatacgaatatttgattttagtcactctaaaatatttcttaggtttttggtccctct 11623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 99 - 169
Target Start/End: Complemental strand, 175598 - 175528
Alignment:
Q  99 tccttttaaatacaccaacatttaattttagtctctctaaaatattccttatgtttttggtccctctaaaa 169  Q
    ||||| |||||| |||||| ||| ||||||||||||||||||| |||||||  ||||| |||||| |||||    
T  175598 tccttataaatataccaactttttattttagtctctctaaaattttccttaaatttttagtccctataaaa 175528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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