View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19755_low_55 (Length: 250)
Name: NF19755_low_55
Description: NF19755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19755_low_55 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 34 - 237
Target Start/End: Complemental strand, 18187648 - 18187445
Alignment:
| Q |
34 |
gaagatgaagataaagatgaatgaagactatgatcagataaatcttcatgagcaaaaggaggagaaaattctgaggaagaatcattggtaggaacatcgg |
133 |
Q |
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| T |
18187648 |
gaagatgaagataaagatgaatgaagactatgatcagagaaatcttcatgagcaagatgaggagaaaattctgaggaagaatcattggtaggaacatcgg |
18187549 |
T |
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| Q |
134 |
tattgtgtttttgaaaaatggttctcccgaaaagcttcatggttgaatcattagtcatctcaggtatatatgttgaagaagtttttgttgttgtttcttt |
233 |
Q |
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| T |
18187548 |
tgttgtgtttttgaaaaatggttctcccgaaaagcttcatggttgaatcattagtcatctcaggtatatatgttgaagaagtttttgttgttgtttcttt |
18187449 |
T |
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| Q |
234 |
gttc |
237 |
Q |
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|||| |
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| T |
18187448 |
gttc |
18187445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 18192672 - 18192458
Alignment:
| Q |
1 |
tatctctttgaatcatgttcgtttggagaagatgaagatgaagataaagatgaatgaagactatgatcagataaatcttcatgagcaaaaggaggagaaa |
100 |
Q |
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| T |
18192672 |
tatctctttgaatcatgttcgtttggagaagatgaagatgaagataaagatgaatgaagactatgatcagagaaatcttcatgaccaagaggaggagaaa |
18192573 |
T |
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| Q |
101 |
attctgaggaagaatcattggtaggaacatcggtattgtgtttttgaaaaatggttctcccgaaaagcttcatggttgaatcattagtca--tctcaggt |
198 |
Q |
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| T |
18192572 |
actccgaggaataat------------cgtcggtgttgcgtgtttgaaaaattgttctcccgaaaagctttatggttgaatcattagtcatctctctggt |
18192485 |
T |
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| Q |
199 |
atatatgttgaagaagtttttgttgtt |
225 |
Q |
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| T |
18192484 |
atatatgttgaagaagtttttgttgtt |
18192458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 103 - 199
Target Start/End: Complemental strand, 18229200 - 18229104
Alignment:
| Q |
103 |
tctgaggaagaatcattggtaggaacatcggtattgtgtttttgaaaaatggttctcccgaaaagcttcatggttgaatcattagtcatctcaggta |
199 |
Q |
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| T |
18229200 |
tctgaggaaaaatcattggtagtaacatcggtgttgtgtgtttgaaaaatggttctcccgaaaagctttatggttgaatcattagtcatctcaggta |
18229104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 34 - 226
Target Start/End: Complemental strand, 18197205 - 18197010
Alignment:
| Q |
34 |
gaagatgaagataaagatgaatgaagactatgatcagataaatcttcatgagcaaaaggaggagaaaattctga------ggaagaatcattggtaggaa |
127 |
Q |
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| T |
18197205 |
gaagaggaagacatagatgaatgaagactatgatgagataaatcttcatgaggaa---gcggagaaaattctgactctgaggaagaatcattggtagata |
18197109 |
T |
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| Q |
128 |
catcggtattgtgtttttgaaaaatggttctcccgaaaagcttcatggttgaatcattagtcatctcaggtatatatgttgaagaagtttttgttgttg |
226 |
Q |
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| T |
18197108 |
catcgatgttgtgtgttataaaaatcgttctcccaaaaagcgttatggttgaattattaatcatctcgggtatatctgtagaataagtttttgttgttg |
18197010 |
T |
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