View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19755_low_57 (Length: 250)
Name: NF19755_low_57
Description: NF19755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19755_low_57 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 29 - 231
Target Start/End: Original strand, 42155801 - 42156001
Alignment:
| Q |
29 |
tgatagtgtgatgattaaaaatgaatgtatgaatgaacactttttacagtgatcttgtagcaactaatataacaaactaacaactaatattttaggaaag |
128 |
Q |
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| T |
42155801 |
tgatagtgtgatgattaaaaatgaatgtatgaatgaacactttttacagtgatcttgtagcaactaatataacaaactaacaactaatattttaggaaag |
42155900 |
T |
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| Q |
129 |
ttacttcaaacttcttgttttgtaccattgatataaagtaccattttggttttggggtctaccagtaggtgaaaatccaaggaggttggaaacatagaaa |
228 |
Q |
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| T |
42155901 |
ttacttcaaacttcttgttttgtaccattg--ataaagtaccattttggttttggggtctaccagtaggtgaaaatccaaggaggttggaaacatagaaa |
42155998 |
T |
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| Q |
229 |
aca |
231 |
Q |
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||| |
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| T |
42155999 |
aca |
42156001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 37 - 187
Target Start/End: Original strand, 42165932 - 42166080
Alignment:
| Q |
37 |
tgatgattaaaaatgaatgtatgaatgaacactttttacagtgatcttgtagcaactaatataacaaactaacaactaatattttaggaaagttacttca |
136 |
Q |
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||||||||| ||||||||| ||| |||| |||||||||| |||||| || || ||||||||||||||| || || ||| ||| | ||||| | ||||| |
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| T |
42165932 |
tgatgattagaaatgaatgaatgtatgatcactttttacggtgatcatgaagtaactaatataacaaaatacaaattaacgtttcatgaaagcttcttca |
42166031 |
T |
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| Q |
137 |
aacttcttgttttgtaccattgatataaagtaccattttggttttggggtc |
187 |
Q |
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|||||||||||||| |||| || |||||||||| |||||||||| ||||| |
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| T |
42166032 |
aacttcttgttttgcaccactg--ataaagtaccgttttggtttttgggtc |
42166080 |
T |
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